Bioconductor Qiime

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r phyloseq import_biom otu qiime

updated 8.6 years ago by mcmurdie ▴ 20 • written 8.6 years ago by moanam • 0

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1.6k

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metagenomeseq qiime biom

updated 7.7 years ago by Joseph Nathaniel Paulson ▴ 280 • written 7.7 years ago by dr.richrodrigues • 0

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1.9k

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biom json hdf5 qiime phyloseq

updated 7.5 years ago by Bernd Fischer ▴ 550 • written 7.5 years ago by newmanss • 0

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2.3k

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R qiime

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by trichter • 0

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1000

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deseq2 qiime

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by syafiqkamarulazman • 0

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1.4k

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deseq2 R microbiome phyloseq qiime

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by ssingh59 • 0

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827

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deseq2 R fedora qiime

updated 5.8 years ago by Michael Love 41k • written 5.8 years ago by kperlejewski • 0

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Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k

Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.

Answer: DESeq2 v1.35.0 by James W. MacDonald 65k

Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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Popular Question to rohitsatyam102 ▴ 20