Bioconductor Qiime

Showing : qiime • reset

votes

replies

20k

views

r phyloseq import_biom otu qiime

updated 8.5 years ago by mcmurdie ▴ 20 • written 8.5 years ago by moanam • 0

vote

replies

994

views

deseq2 qiime

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by syafiqkamarulazman • 0

votes

1.9k

views

biom json hdf5 qiime phyloseq

updated 7.5 years ago by Bernd Fischer ▴ 550 • written 7.5 years ago by newmanss • 0

vote

1.4k

views

deseq2 R microbiome phyloseq qiime

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by ssingh59 • 0

votes

821

views

deseq2 R fedora qiime

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by kperlejewski • 0

vote

2.3k

views

R qiime

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by trichter • 0

votes

1.6k

views

metagenomeseq qiime biom

updated 7.7 years ago by Joseph Nathaniel Paulson ▴ 280 • written 7.7 years ago by dr.richrodrigues • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0