Showing : qpgraph • reset
2
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2
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qpgraph's qpPCC function giving different results than cor.test()
qpgraph
updated 7.9 years ago by ★ 3.4k • written 7.9 years ago by ▴ 10
0
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1
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1.6k
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Problem installing qpgraph
qpgraph qpgraph
updated 14.4 years ago by 21k • written 14.4 years ago by ▴ 20
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0
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1.1k
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Qpgraph error msg
qpgraph qpgraph
14.7 years ago Robert Castelo ★ 3.4k
0
votes
1
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1.1k
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reverse engineering package
minet qpgraph minet qpgraph
updated 14.8 years ago by ★ 3.4k • written 14.8 years ago by ★ 1.2k
0
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1.4k
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interaction analysis
Transcription Microarray Network qpgraph Transcription Microarray Network qpgraph
15.9 years ago Robert Castelo ★ 3.4k
5 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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