Bioconductor RTANDEM

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peptide peptideidentification rTANDEM MSGFplus Alternatives

updated 2.8 years ago by shepherl 4.2k • written 2.8 years ago by vaddanki ▴ 10

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rtandem bug compilation error

7.4 years ago Ed Siefker ▴ 230

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Proteomics trigger rTANDEM Proteomics trigger rTANDEM

12.9 years ago Frederic Fournier ▴ 40

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Proteomics rTANDEM Proteomics rTANDEM

updated 12.9 years ago by Steve Lianoglou ★ 13k • written 12.9 years ago by Frederic Fournier ▴ 40

4 results • Page 1 of 1

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Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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