Bioconductor RWikiPathways

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

5.2 years ago Emilia ▴ 40

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typo NES rwikipathways downregulated genes gene set enrichment analysis

updated 6.9 years ago by alex.pico ▴ 30 • written 7.3 years ago by Fischer-philipp ▴ 30

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Answer: tximeta cannot open annotation gtf? by ATpoint ★ 5.0k

> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…

Answer: GSEA error by James W. MacDonald 68k

At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Comment: Unable to find ENTREZ IDs by Adithi • 0

Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…

Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k

Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…

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Answer: GSEA error

Answer: OrgDb for maize

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