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Answer: readBam vs read_bam_insert_metrics by lincolnprice964 • 0
Yes read_bam_insert_metrics() can take input directly from a BAM file or from an object created with readBam(). Use whichever fits best in …
Comment: DESeq2 interactions by lincolnprice964 • 0
If you want HP vs CNP directly, set up the interaction model: dds <- DESeqDataSetFromTximport(genes.salmon, coldata, ~ pollution + temp + …
Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0
Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …
Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
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Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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