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readCufflinks
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error while buliding database in readCufflinks in CummeRbund package
cummerbund
readCufflinks
8.4 years ago
Pinal
• 0
0
votes
0
replies
1.4k
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Problems in building Cummerbundcuff Database
cummerbund
readcufflinks
geneset
8.3 years ago
alessio.stevano
• 0
0
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1
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1.2k
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KEGG with pathview using CuffDiff data
kegg
readcufflinks
cuffdiff
cuff
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
pierre.biojoux
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0
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0
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1.1k
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CuffSet instance with 0 samples
cummerbund
sqlite
readcufflinks
6.1 years ago
eculfa
• 0
0
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0
replies
926
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CummeRbund fail with example directory
cummerbund
readcufflinks
6.8 years ago
tommy.vo
• 0
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Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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