Bioconductor Geneset

Showing : geneset • reset

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geneset GeneSetEnrichment msigdb

23 months ago Seongsu • 0

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2.8k

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gseGO GeneSet clusterProfiler GeneSetEnrichment

updated 2.7 years ago by James W. MacDonald 68k • written 2.7 years ago by manuelsokolov • 0

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singscore GSVA GSEA subtypes geneset

updated 5.2 years ago by Dharmesh D Bhuva • 0 • written 7.0 years ago by Pietro ▴ 40

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1.6k

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GSVA geneset RNASeq TCGA subtypes

7.2 years ago Pietro ▴ 40

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3.2k

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kegg geneset genelist gage package

updated 8.6 years ago by Gordon Smyth 53k • written 8.6 years ago by sup230 ▴ 30

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2.4k

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gseabase geneset

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by siajunren • 0

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1.8k

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cummerbund readcufflinks geneset

10.2 years ago alessio.stevano • 0

7 results • Page 1 of 1

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Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by nytwordlehints • 0

Amazing insights! I learned a lot from this.[pokemon overlord][1] [1]: https://pokemonoverlord.com

Answer: Is it still possible to do batch correction for my data? by Gordon Smyth 53k

I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch ``` design <-…

Answer: specifying refColumn in calcNormFactors() by Gordon Smyth 53k

Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…

Answer: Sex prediction in sesame for EPICV2 by Tim Peters ▴ 230

Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…

Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0

Thank you, I appreciate your time and help.

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A: Fundamental questions about DESeq2 and RUVs in targeted gene set of 500

Answer: p-adjusted values in multiple comparisons

Comment: p-adjusted values in multiple comparisons

DiffBind dropping peaks in ATAC-seq data

A: decideTests() options in LIMMA

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