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readCufflinks
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Problems in building Cummerbundcuff Database
cummerbund
readcufflinks
geneset
8.3 years ago
alessio.stevano
• 0
0
votes
0
replies
1.5k
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error while buliding database in readCufflinks in CummeRbund package
cummerbund
readCufflinks
8.4 years ago
Pinal
• 0
0
votes
0
replies
926
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CummeRbund fail with example directory
cummerbund
readcufflinks
6.8 years ago
tommy.vo
• 0
0
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1
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1.2k
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KEGG with pathview using CuffDiff data
kegg
readcufflinks
cuffdiff
cuff
updated 6.5 years ago by
thokall
▴ 160 • written 6.5 years ago by
pierre.biojoux
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0
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0
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1.1k
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CuffSet instance with 0 samples
cummerbund
sqlite
readcufflinks
6.1 years ago
eculfa
• 0
5 results • Page
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Comment: limma-voom: Calculate the log-fold change in gene expression within a sample
by
xofer16091
• 0
A few more names for [dino game][1] are Dino Dun, Chrome Dino, T-Rex, Google, and No Internet games. You can play the online game on a tabl…
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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