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readcufflinks
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1.6k
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CuffSet instance with 0 samples
cummerbund
sqlite
readcufflinks
7.6 years ago
eculfa
• 0
0
votes
1
reply
1.7k
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KEGG with pathview using CuffDiff data
kegg
readcufflinks
cuffdiff
cuff
updated 8.0 years ago by
thokall
▴ 160 • written 8.0 years ago by
pierre.biojoux
• 0
0
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0
replies
1.2k
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CummeRbund fail with example directory
cummerbund
readcufflinks
8.4 years ago
tommy.vo
• 0
0
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0
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1.8k
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Problems in building Cummerbundcuff Database
cummerbund
readcufflinks
geneset
9.9 years ago
alessio.stevano
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0
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0
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1.9k
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error while buliding database in readCufflinks in CummeRbund package
cummerbund
readCufflinks
10.0 years ago
Pinal
• 0
5 results • Page
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Comment: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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