Showing : recount2 • reset
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Does DESeq2 need "scale_counts" for GTEx and TCGA data from recount2 (TCGAquery_recount2)?
TCGAbiolinks RECOUNT2 DESeq2
updated 10 weeks ago by 33k • written 10 weeks ago by ▴ 20
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2
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Recount2 Bigwigs for TCGA
R TCGA recount2 recount
updated 15 months ago by ▴ 870 • written 15 months ago by • 0
3
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4
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471
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What assays are distributed with Recount TX data
recount recount2 RangedSummarizedExperiment
updated 22 months ago by ▴ 870 • written 2.6 years ago by ▴ 100
3 results • Page 1 of 1
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Comment: what does " * " denote under the strand column of the GRanges object file outpu by Peter Hickey ▴ 470
Just to add to James' answer. If you look up the help page for `strand` (using `help("strand", "BiocGenerics")`) you'll find some document…
Comment: Generating a DelayedArray with a size greater than .Machine$integer.max by Hervé Pagès 15k
Let's distinguish between an array of length > `.Machine$integer.max` where all the dimensions are <= `.Machine$integer.max` (i.e. `prod(di…
Answer: EnhancedVolcano Label Question by Kevin Blighe 3.1k
Hi, I think that you may be using the previous version of the package (?). If you update to the current version (which may first require up…
Answer: what does " * " denote under the strand column of the GRanges object file outpu by James W. MacDonald 57k
With ATAC-Seq you are detecting regions of accessible DNA, which isn't strand specific, so you shouldn't expect a peak to be on a particula…
Answer: Generating a DelayedArray with a size greater than .Machine$integer.max by Hervé Pagès 15k
Sorry for the late answer. The DelayedArray framework does not support datasets with dimensions greater than 2^31-1 (`.Machine$integer.m…
Votes
Answer: Generating a DelayedArray with a size greater than .Machine$integer.max
Answer: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
Answer: genomicElementDistribution function not found
A: Deseq2 use fpkm
Comment: deseq2 normalized data with heatmap
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