Showing : RangedSummarizedExperiment • reset
0
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Converstion of Ranged Summarized Experiment to Data Frame
SummarizedExperiment RangedSummarizedExperiment
updated 20 months ago by ▴ 800 • written 20 months ago by • 0
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283
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SummarizedExperiment filter transcript
RangedSummarizedExperiment
22 months ago georgina.fqw ▴ 10
3
votes
4
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714
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What assays are distributed with Recount TX data
recount recount2 RangedSummarizedExperiment
updated 2.8 years ago by ▴ 980 • written 3.6 years ago by ▴ 100
1
vote
2
replies
546
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Extending SummarizedExperiment without rowRanges argument
summarizedexperiment rangedsummarizedexperiment
updated 3.7 years ago by 25k • written 3.7 years ago by • 0
1
vote
3
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805
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
3.7 years ago s.w.vanderlaan ▴ 30
1
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1
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579
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subsets different type of data together
R multiassayexperiment rangedsummarizedexperiment summarizedexperiment
updated 4.0 years ago by 1.1k • written 4.0 years ago by ▴ 160
1
vote
6
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789
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deconvole counts per feature from summerizedOverlaps with GRangesLists
summarizeoverlaps rangedsummarizedexperiment grangeslist summarizedexperiment
4.3 years ago cosmin • 0
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2
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784
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Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 4.3 years ago by ▴ 160 • written 4.3 years ago by • 0
2
votes
2
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725
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Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment packages granges iranges
updated 4.5 years ago by ★ 27k • written 4.5 years ago by ▴ 60
3
votes
3
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818
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How to construct an up-to-date and annotation-rich RangeSummarizedExperiment object around old microarray data?
geoquery summarizedexperiment rangedsummarizedexperiment
updated 4.7 years ago by 21k • written 4.7 years ago by ▴ 100
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4
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1.2k
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RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
rangedsummarizedexperiment deseqdatasetfrommatrix deseq2 tximport
4.8 years ago lirongrossmann ▴ 60
0
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1
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935
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Error invalid class "SummarizedExperiment" when using library("MultiDataSet")
summarizedexperiment rangedsummarizedexperiment multidataset
4.8 years ago s.w.vanderlaan ▴ 30
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5
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1.9k
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Load saved RangedSummarizedExperiment as Deseq2 dataset
deseq2 hdf5 rangedsummarizedexperiment rnaseq
4.9 years ago Jakob Petereit • 0
1
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2
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819
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rowRanges in Summarized Experiment changes counts
deseq2 summarizedexperiment rangedsummarizedexperiment rnaseq
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 10
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3
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1.1k
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genes symbol in RangedSummarizedExperiment object and add GRangesList to DESeqDataSet object in DESeq2
deseq2 rangedsummarizedexperiment grangeslist
5.3 years ago layal8785 • 0
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3
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2.4k
views
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting
6.0 years ago ErickF ▴ 40
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5
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1.0k
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how to annotate GenomicRanges objects with genome build
grangeslist rangedsummarizedexperiment parathyroidSE genomicranges granges
6.3 years ago Levi Waldron 1.1k
17 results • Page 1 of 1
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Replies
Comment: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k
That's a problem related to your lack of R basics, neither DESeq2 or Bioconductor software/technical problem. Please learn R basics first. …
Comment: How to get DESeq2 results for a list of genes by Lucía ▴ 10
Hi, thank you! Unfortunately that doesn't work. The first option gives me this error: ``` # Extracting for list my_genes <- read.delim("di…
Comment: Error by ATpoint ★ 1.3k
https://github.com/conda-forge/rpy2-feedstock/issues/1
Comment: Error: BiocParallel errors by lxl13260684135 • 0
I came across the same problem, have you solved it?
Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k
Standard rules apply for filtering in R. If the genes are the rownames of the results object `res` then: res[my_ges,] or if the colu…
Votes
C: DESEQ2 'results' filter by value for multiple conditions (contrast off?)
C: DESEQ2 'results' filter by value for multiple conditions (contrast off?)
How to get DESeq2 results for a list of genes
Answer: setting sizeFactors from scran :: caculateSumFactors.
Answer: ComplexHeatmap: Change font size of annotation axis values
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