Showing : RangedSummarizedExperiment • reset
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Converstion of Ranged Summarized Experiment to Data Frame
SummarizedExperiment RangedSummarizedExperiment
updated 2.9 years ago by ▴ 810 • written 2.9 years ago by • 0
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495
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SummarizedExperiment filter transcript
RangedSummarizedExperiment
3.0 years ago georgina.fqw ▴ 10
3
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4
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1.2k
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What assays are distributed with Recount TX data
recount recount2 RangedSummarizedExperiment
updated 4.1 years ago by ★ 1.0k • written 4.9 years ago by ▴ 120
1
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2
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936
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Extending SummarizedExperiment without rowRanges argument
summarizedexperiment rangedsummarizedexperiment
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
1
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3
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1.3k
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
4.9 years ago s.w.vanderlaan ▴ 30
1
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1
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824
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subsets different type of data together
R multiassayexperiment rangedsummarizedexperiment summarizedexperiment
updated 5.3 years ago by 1.1k • written 5.3 years ago by ▴ 160
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6
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1.2k
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deconvole counts per feature from summerizedOverlaps with GRangesLists
summarizeoverlaps rangedsummarizedexperiment grangeslist summarizedexperiment
5.5 years ago cosmin • 0
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2
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1.1k
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Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 5.5 years ago by ▴ 160 • written 5.5 years ago by • 0
2
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2
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1.1k
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Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment packages granges iranges
updated 5.7 years ago by ★ 28k • written 5.7 years ago by ▴ 60
3
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3
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1.2k
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How to construct an up-to-date and annotation-rich RangeSummarizedExperiment object around old microarray data?
geoquery summarizedexperiment rangedsummarizedexperiment
updated 5.9 years ago by 21k • written 5.9 years ago by ▴ 100
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4
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1.9k
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RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
rangedsummarizedexperiment deseqdatasetfrommatrix deseq2 tximport
6.0 years ago lirongrossmann ▴ 80
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1
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1.4k
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Error invalid class "SummarizedExperiment" when using library("MultiDataSet")
summarizedexperiment rangedsummarizedexperiment multidataset
6.1 years ago s.w.vanderlaan ▴ 30
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5
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2.5k
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Load saved RangedSummarizedExperiment as Deseq2 dataset
deseq2 hdf5 rangedsummarizedexperiment rnaseq
6.2 years ago Jakob Petereit • 0
1
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2
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1.1k
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rowRanges in Summarized Experiment changes counts
deseq2 summarizedexperiment rangedsummarizedexperiment rnaseq
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 10
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3
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1.4k
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genes symbol in RangedSummarizedExperiment object and add GRangesList to DESeqDataSet object in DESeq2
deseq2 rangedsummarizedexperiment grangeslist
6.5 years ago layal8785 • 0
4
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3
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2.7k
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Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting
7.2 years ago ErickF ▴ 40
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5
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1.3k
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how to annotate GenomicRanges objects with genome build
grangeslist rangedsummarizedexperiment parathyroidSE genomicranges granges
7.5 years ago Levi Waldron 1.1k
17 results • Page 1 of 1
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Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error by Gordon Smyth 48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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