Showing : recount • reset
1
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4
replies
1.2k
views
NA values of count matrix in class DESeqDataSet
rna-seq recount
updated 22 days ago by ▴ 870 • written 3.6 years ago by • 0
0
votes
1
reply
93
views
Using recount data to calculate Intron retention
snapcount recount3 recount
updated 6 weeks ago by ▴ 870 • written 6 weeks ago by • 0
0
votes
2
replies
139
views
Recount2 Bigwigs for TCGA
R TCGA recount2 recount
updated 13 months ago by ▴ 870 • written 14 months ago by • 0
0
votes
1
reply
138
views
recount: inconsistency between pheno table structure for gene and transcript datasets
software error recount
updated 17 months ago by ▴ 870 • written 17 months ago by • 0
4
votes
7
replies
339
views
recount TCGA data one gene_id mapped to multiple symbols and vice versa
recount
updated 18 months ago by ▴ 870 • written 18 months ago by ▴ 20
0
votes
4
replies
362
views
Inconsistent geo_char for rse_tx
bug recount
2.4 years ago • updated 19 months ago Jacques.van-Helden • 0
0
votes
1
reply
154
views
How to identify all SRPs with GTEx bigwig files?
recount
20 months ago hyp15 • 0
0
votes
2
replies
399
views
Obtaining recount project data in TPM?
recount
updated 20 months ago by ▴ 870 • written 20 months ago by • 0
3
votes
4
replies
428
views
What assays are distributed with Recount TX data
recount recount2 RangedSummarizedExperiment
updated 20 months ago by ▴ 870 • written 2.5 years ago by ▴ 100
1
vote
6
replies
387
views
how to download bigwig from recount2?
recount
updated 21 months ago by 25k • written 21 months ago by • 0
1
vote
5
replies
350
views
scale_counts targetSize normalization for recount2 counts
recount
updated 23 months ago by ▴ 870 • written 23 months ago by • 0
0
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3
replies
481
views
Problem constructing DESeq objects with large integers.
deseq2 recount
2.0 years ago Zach Brehm • 0
3
votes
3
replies
372
views
Recount data for unannotated genes
recount RNAseq gencode lncRNA gene annotation
updated 2.1 years ago by ▴ 30 • written 2.1 years ago by ▴ 20
1
vote
1
reply
294
views
Number of reads from recount are greater than target library size (40 million) for TCGA and GTEx projects
recount
updated 2.1 years ago by ▴ 870 • written 2.1 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Is GTEx age and sex data available via the recount package?
recount gtex
updated 2.6 years ago by ▴ 870 • written 2.6 years ago by • 0
0
votes
1
reply
385
views
What does scaling RNASeq data using the area under coverage information (AUC) mean ? - related to recount package
library size factor recount
updated 2.6 years ago by ▴ 870 • written 2.7 years ago by • 0
0
votes
3
replies
476
views
According to Recount2 metadata and Recount2 website, SRP000941 has 345 samples, but after downloading the study the rse_gene object only has 343 samp…
recount
updated 3.2 years ago by ▴ 870 • written 3.2 years ago by • 0
0
votes
2
replies
427
views
Recount2 TCGA metadata missing sample, run and experiment columns
recount metadata tcga
updated 3.2 years ago by • 0 • written 3.2 years ago by • 0
3
votes
3
replies
708
views
derfinder: how to merge regions and counts from individual chromosomes
derfinder recount
updated 3.5 years ago by ▴ 870 • written 3.5 years ago by ▴ 480
0
votes
1
reply
546
views
Getting pheno tables from recount datasets without any NA values in characteristics and geo_accession fields and also without duplicated row.names
recount summarizedexperiment
updated 3.5 years ago by ▴ 870 • written 3.5 years ago by • 0
0
votes
1
reply
1.6k
views
NA values of count matrix in class DESeqDataSet
rnaseq recount
3.6 years ago maleknias • 0
0
votes
1
reply
1.1k
views
Recount TCGA data
recount
updated 3.7 years ago by ▴ 870 • written 3.7 years ago by • 0
0
votes
5
replies
724
views
Matching columns to sample names
recount
updated 3.7 years ago by ▴ 870 • written 3.7 years ago by • 0
2
votes
2
replies
700
views
Number of IRanges elements in TCGA HiSeqV2 dataset
r tcga recount iranges
updated 3.9 years ago by ▴ 870 • written 3.9 years ago by ▴ 20
3
votes
10
replies
879
views
recount counts in the example experiment
recount
updated 4.0 years ago by ▴ 870 • written 4.0 years ago by 32k
2
votes
1
reply
639
views
recount not available
recount
updated 4.1 years ago by 25k • written 4.1 years ago by ★ 1.0k
2
votes
4
replies
1.1k
views
TCGA - Different Sample Number
recount
updated 4.2 years ago by ▴ 20 • written 4.2 years ago by • 0
0
votes
14
replies
1.5k
views
Error through importing (project = 'SRP009615') or even to download any BigWig File
recount Tutorial
updated 4.2 years ago by ▴ 870 • written 4.2 years ago by • 0
1
vote
4
replies
2.0k
views
The recount package is not available for R version 3.3.1
recount
4.7 years ago arjunkrish • 0
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Changes in the mapping proportions aren't surprising, the aligner has probably changed a fair bit in the last 6 years since the paper was p…
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Thanks - that is interesting to know.
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Sorry, one more quick reply. So, changing lengthConnectors and/or directionConnectors doesn't let me render any more connectors, but I foun…
Comment: Warning in EnhancedVolcano plot by charles.feigin ▴ 20
Ok I understand. I'll play around with these. Thank you!
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What organisms are they?
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A: How to make a (limma) heatmap displaying gene ID's as rownames
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