Biostar Recount

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recount

updated 8 days ago by Henry • 0 • written 8 days ago by nathan-temple • 0

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146

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recount3 recount TCGA

updated 6 weeks ago by Leonardo Collado Torres ▴ 980 • written 6 weeks ago by Xuebing ▴ 10

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1.7k

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rna-seq recount

updated 13 months ago by Leonardo Collado Torres ▴ 980 • written 4.6 years ago by maleknias • 0

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489

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snapcount recount3 recount

updated 13 months ago by Leonardo Collado Torres ▴ 980 • written 13 months ago by Mariela Cortés López • 0

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569

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R TCGA recount2 recount

updated 2.1 years ago by Leonardo Collado Torres ▴ 980 • written 2.2 years ago by alex.v.nesta • 0

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290

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software error recount

updated 2.4 years ago by Leonardo Collado Torres ▴ 980 • written 2.4 years ago by Jacques.van-Helden • 0

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706

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recount

updated 2.5 years ago by Leonardo Collado Torres ▴ 980 • written 2.5 years ago by Sheldon Pang ▴ 20

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611

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bug recount

3.4 years ago • updated 2.6 years ago Jacques.van-Helden • 0

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309

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recount

2.7 years ago hyp15 • 0

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807

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recount

updated 2.7 years ago by Leonardo Collado Torres ▴ 980 • written 2.7 years ago by codden.c • 0

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666

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recount recount2 RangedSummarizedExperiment

updated 2.7 years ago by Leonardo Collado Torres ▴ 980 • written 3.5 years ago by k.vitting.seerup ▴ 100

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750

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recount

updated 2.8 years ago by Martin Morgan 25k • written 2.8 years ago by hyp15 • 0

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707

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recount

updated 2.9 years ago by Leonardo Collado Torres ▴ 980 • written 2.9 years ago by sidreed34 • 0

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970

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deseq2 recount

3.0 years ago Zach Brehm • 0

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659

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recount RNAseq gencode lncRNA gene annotation

updated 3.1 years ago by chris.wilks ▴ 40 • written 3.1 years ago by francesco.gandolfi ▴ 20

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473

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recount

updated 3.1 years ago by Leonardo Collado Torres ▴ 980 • written 3.1 years ago by Sheldon Pang ▴ 20

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1.7k

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recount gtex

updated 3.6 years ago by Leonardo Collado Torres ▴ 980 • written 3.6 years ago by abe • 0

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552

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library size factor recount

updated 3.6 years ago by Leonardo Collado Torres ▴ 980 • written 3.7 years ago by elmahy2005 • 0

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644

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recount

updated 4.2 years ago by Leonardo Collado Torres ▴ 980 • written 4.2 years ago by Kayla • 0

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577

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recount metadata tcga

updated 4.2 years ago by rosabellascottgm • 0 • written 4.2 years ago by Mariela Cortés-López • 0

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1.0k

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derfinder recount

updated 4.5 years ago by Leonardo Collado Torres ▴ 980 • written 4.5 years ago by António Miguel de Jesus Domingues ▴ 480

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693

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recount summarizedexperiment

updated 4.5 years ago by Leonardo Collado Torres ▴ 980 • written 4.5 years ago by Mustafa ABUELQUMSAN • 0

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2.1k

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rnaseq recount

4.6 years ago maleknias • 0

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1.2k

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recount

updated 4.7 years ago by Leonardo Collado Torres ▴ 980 • written 4.7 years ago by rajesha1986 • 0

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1.1k

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recount

updated 4.7 years ago by Leonardo Collado Torres ▴ 980 • written 4.7 years ago by b.curran • 0

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886

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r tcga recount iranges

updated 4.9 years ago by Leonardo Collado Torres ▴ 980 • written 4.9 years ago by biomiha ▴ 20

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1.2k

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recount

updated 5.0 years ago by Leonardo Collado Torres ▴ 980 • written 5.0 years ago by Michael Love 36k

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761

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recount

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by Stephen Henderson ★ 1.0k

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1.4k

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recount

updated 5.2 years ago by sellis18 ▴ 20 • written 5.2 years ago by iedenkim • 0

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2.0k

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recount Tutorial

updated 5.2 years ago by Leonardo Collado Torres ▴ 980 • written 5.2 years ago by Mustafa ABUELQUMSAN • 0

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2.2k

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recount

5.7 years ago arjunkrish • 0

31 results • Page 1 of 1

Recent ...

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Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by chrarnold • 0

Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…

Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k

The object in the `.rds` file, `sampleMetaData.df`, is already a `DBA` object, with eight samples: > sampleMetaData.df <- readRDS("~/D…

Comment: Variance explained (coefficient of determination) in edgeR by Gemma • 0

Both strategies actually lead to the same results. Resolved, thanks!

Comment: MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repositor by Laurent Gatto 1.5k

Yes, indeed, if you have local files, you can provide their full path as input to the `openMSfile()` function. This is also what happens in…

Comment: MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repositor by gianluigi.caltabiano • 0

Hello, I have the same exact problem. I am doing a tutorial about Quantitative Proteomics using rpx to import data an PXDataset keep givin…

Votes

Answer: DESeq2: Extracting Averaged Counts Information from dds and rld

Answer: Variance explained (coefficient of determination) in edgeR

Comment: cellCounts() function floating point error

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