Biostar RecountWorkflow

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recount recountWorkflow recount3

updated 9 weeks ago by Leonardo Collado Torres ★ 1.0k • written 12 weeks ago by dml • 0

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recount recountWorkflow recount3

updated 9 weeks ago by Leonardo Collado Torres ★ 1.0k • written 3 months ago by Max Bone • 0

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recountWorkflow recount3

updated 7 weeks ago by Leonardo Collado Torres ★ 1.0k • written 3 months ago by soevertje ▴ 20

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recount3 recountWorkflow

updated 17 months ago by Leonardo Collado Torres ★ 1.0k • written 17 months ago by António Miguel de Jesus Domingues ▴ 490

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Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

As an exercise I've tried to analyze simpler but similar experiment. The data is from real experiment comparing wild type and mutant transc…

Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…

Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240

Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…

Answer: Are polynomial contrasts for a time factor possible in DESeq2? by ATpoint ★ 2.3k

As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…

Comment: does anyone how to create rarefaction curves from a phyloseq object? by RMiller • 0

I am not sure what you have tried, but the "vegan" library (package) has the ability to do rarefaction. So make sure to load `library("veg…

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Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

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Popular Question to Robert Castelo ★ 3.0k