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Showing :
recount3
•
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0
votes
1
reply
173
views
Junction CPM via Snapcount and Recount3
snapcount
recount3
written 6 weeks ago by
henry.tietz
• 0
0
votes
1
reply
1.5k
views
Retrieve Salmon transcript quantification file from recount3
recount3
updated 8 months ago by
Leonardo Collado Torres
★ 1.1k • written 8 months ago by
kyn
▴ 10
0
votes
3
replies
1.1k
views
Merging multi-fastq samples in recount3
recount3
written 18 months ago by
Charlotte Capitanchik
• 0
0
votes
4
replies
1.4k
views
Recount3: PCR duplicates
pcrduplicates
recount3
multimappingreads
updated 19 months ago by
ATpoint
★ 5.0k • written 2.7 years ago by
seline.natalie
• 0
0
votes
1
reply
982
views
Recount3 error downloading data
recount3
recount
updated 20 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.0 years ago by
Max Bone
• 0
4
votes
3
replies
1.5k
views
recount3 problem downloading data from source sra
recount3
updated 21 months ago by
Leonardo Collado Torres
★ 1.1k • written 21 months ago by
PABLO ANTONIO
▴ 10
1
vote
1
reply
1.1k
views
Transcript level expression for CCLE
recount3
recount
CCLE
updated 2.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.1 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
2
replies
1.5k
views
TCGA counts to TPM from recount3 do not seem to right
recount3
TCGA
RNASeq
updated 2.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 2.3 years ago by
tangming2005
▴ 200
0
votes
2
replies
1.4k
views
recount3 monorail pipeline version
recount3
2.4 years ago • updated 2.2 years ago
Lorenzo
• 0
0
votes
3
replies
2.6k
views
Recount3 error with default "recount3_url" option
recount3
updated 2.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
Cornwell, Adam
▴ 110
0
votes
2
replies
1.5k
views
Recount3 data download problem
recount
recount3
updated 2.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
gamma.jian
▴ 10
2
votes
6
replies
2.4k
views
Unable to load data from duffel.rail
recount
recountWorkflow
recount3
updated 2.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
Max Bone
• 0
2
votes
11
replies
2.9k
views
Not able to download recount3 data
recount3
updated 2.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
Niveditha
▴ 20
0
votes
2
replies
1.4k
views
Cannot download data from IDIES links
recount
recountWorkflow
recount3
updated 2.8 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
dml
• 0
1
vote
3
replies
2.0k
views
Can i perform DEseq2 from 2 different rse objects download from RECOUNT database
DESeq2
recount
GTEx
TCGA
recount3
updated 2.8 years ago by
ATpoint
★ 5.0k • written 2.8 years ago by
David
▴ 20
1
vote
3
replies
1.4k
views
Recount3 data correspond to TCGA data
recount3
updated 13 months ago by
Leonardo Collado Torres
★ 1.1k • written 2.9 years ago by
kevin lee
• 0
2
votes
3
replies
1.9k
views
BigWig files provided by recount3
recount3
updated 3.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.0 years ago by
mario.keller.1988
▴ 20
4
votes
6
replies
1.9k
views
recount 3 protect read length metadata
recountWorkflow
recount3
updated 3.1 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.2 years ago by
soever
▴ 20
1
vote
1
reply
1.6k
views
searching study metadata in recount3
recount3
updated 3.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.4 years ago by
andrew.su
▴ 10
0
votes
1
reply
1.4k
views
recount3 transform_counts vs compute_read_counts
recount3
updated 3.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.5 years ago by
fdelillo
• 0
2
votes
2
replies
4.0k
views
Create TPM gene tables/dataframe from ReCount3
recount3
TCGA
GTEx
DESeq2
3.7 years ago
David
▴ 20
10
votes
11
replies
4.3k
views
Counts from recount3 for DESeq2 analysis
recount3
DESeq2
updated 3.5 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.9 years ago by
william.benit
▴ 10
0
votes
2
replies
1.7k
views
Missing sample in recount3 data
recount3
3.9 years ago • updated 3.8 years ago
alex.dietrich
• 0
0
votes
1
reply
1.5k
views
Retrieve the read counts per transcript instead of per gene
recount3
updated 3.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.9 years ago by
oligoelemento
▴ 10
11
votes
8
replies
3.3k
views
Error when downloading data with recount3.
recount3
updated 3.9 years ago by
chris.wilks
▴ 70 • written 5.3 years ago by
Zach Brehm
▴ 20
1
vote
1
reply
2.4k
views
recount3 - download bigwig files for TCGA data
recount3
recount
TCGA
updated 3.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 3.9 years ago by
Xuebing
▴ 10
0
votes
1
reply
1.1k
views
Sample tissue annotation
recount3
updated 4.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 4.1 years ago by
M.M.M.M.
• 0
0
votes
1
reply
1.4k
views
Distinguishing between single cell and bulk data in recount3 study explorer
recount3
updated 4.0 years ago by
Leonardo Collado Torres
★ 1.1k • written 4.2 years ago by
kstachelek
• 0
0
votes
2
replies
3.3k
views
Get read counts for TCGA samples via recount3
recount3
4.3 years ago
mario.keller.1988
▴ 20
2
votes
2
replies
2.2k
views
[recount3] Merge gene counts tables from multiple projects (SRP)
recount3
recountWorkflow
updated 4.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 4.4 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
1
reply
1.5k
views
Different read support for splice junctions using snapcount and recount3
recount3
snapcount
updated 4.3 years ago by
Leonardo Collado Torres
★ 1.1k • written 4.4 years ago by
mario.keller.1988
▴ 20
2
votes
5
replies
2.8k
views
Downloading count matrix for full recount3 dataset
recount3
updated 23 months ago by
Leonardo Collado Torres
★ 1.1k • written 4.6 years ago by
Ben
• 0
0
votes
2
replies
1.8k
views
recount3: advice for working with an unannotated genes
recount3
updated 4.3 years ago by
devorah.fialkoff
• 0 • written 4.7 years ago by
MakeTheBrain
• 0
1
vote
1
reply
2.5k
views
Correlation analyses on TCGA data
RNA-seq
Normalization
edgeR
recount3
updated 4.7 years ago by
Leonardo Collado Torres
★ 1.1k • written 4.8 years ago by
mario.keller.1988
▴ 20
0
votes
1
reply
1.9k
views
Using recount data to calculate Intron retention
snapcount
recount3
recount
updated 4.9 years ago by
Leonardo Collado Torres
★ 1.1k • written 4.9 years ago by
Mariela Cortés López
• 0
35 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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