Showing : recount3 • reset
0
votes
1
reply
76
views
recount3: advice for working with an unannotated genes
recount3
updated 22 days ago by ▴ 870 • written 26 days ago by • 0
1
vote
1
reply
92
views
Correlation analyses on TCGA data
RNA-seq Normalization edgeR recount3
updated 22 days ago by ▴ 870 • written 28 days ago by ▴ 10
0
votes
1
reply
135
views
Using recount data to calculate Intron retention
snapcount recount3 recount
updated 12 weeks ago by ▴ 870 • written 12 weeks ago by • 0
9
votes
6
replies
332
views
Error when downloading data with recount3.
recount3
7 months ago Zach Brehm ▴ 20
4 results • Page 1 of 1
Recent ...
Replies
Answer: Data input for aracne2regulon function in viper package by reef103 • 0
Hi @luna_p , I'm sorry I didn;t see this before. The error might be due to a lack of match between the genes in the network (regulators and…
Comment: deseq2 normalized data with heatmap by Kevin Blighe 3.1k
Hey Ian, specifically just for the heatmap and/or the clustering, we can additionally scale and center the `vsd` or `rld` data. The `scale…
Answer: Difference in mixed test for fry vs mroast by Gordon Smyth 43k
That's a fair question and you're right that the fry/mroast help page doesn't give currently enough information about the mixed p-values. …
Comment: deseq2 normalized data with heatmap by Ian • 0
Hey @kevin , Thanks for the helpful posts! I noticed in your link to this heatmap analysis, you used scale() and not vst(). However, in yo…
Comment: lmFit, continuous exposure, adjustment covariates by AyHi • 0
Dear Gordon, Thank you so much for your reply. It worked well! I just changed y to t because the protein values were included in dat in my…
Votes
Answer: How does the empirical Bayes moderation (eBayes) in the limma pipeline work?
Differential expression across gene features
C: DESeq on transcripts v/s genes
A: DESeq on transcripts v/s genes
DESeq on transcripts v/s genes
Awards • All
Popular Question to haroon.maximas • 0
Scholar to Gordon Smyth 43k
Teacher to Guido Hooiveld ★ 3.0k
Scholar to Michael Love 33k
Scholar to Robert Castelo ★ 2.7k
Locations • All
United States, just now
Germany, 9 minutes ago
The city by the bay, 11 minutes ago
Japan, 38 minutes ago
WEHI, Melbourne, Australia, 41 minutes ago
Traffic: 279 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6