Biostar Recount3

Showing : recount3 • reset

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recount3

10 weeks ago Ben • 0

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recount3

updated 3 months ago by Leonardo Collado Torres ▴ 920 • written 3 months ago by MakeTheBrain • 0

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RNA-seq Normalization edgeR recount3

updated 3 months ago by Leonardo Collado Torres ▴ 920 • written 3 months ago by mario.keller.1988 ▴ 10

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215

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snapcount recount3 recount

updated 5 months ago by Leonardo Collado Torres ▴ 920 • written 5 months ago by Mariela Cortés López • 0

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430

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recount3

10 months ago Zach Brehm ▴ 20

5 results • Page 1 of 1

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Comment: Gradient dotplot by sophieagger • 0

That's smart, I'm a bit worried that it'll break my computer if I get enough levels in there to make me happy, but I'll give it a try.

Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0

Hi Professor Smyth, Thank you very much for the code. That has solved my problem. All the best. Field

Comment: Understanding output of Negative Binomial in DESeq2 by synat.keam • 0

Thank, Senior. sorry for cross posting as I was thinking in case I got different opinion, but the explanation was clear from Biostar. thank…

Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

Cross posted to Biostars https://www.biostars.org/p/9490039/

Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…

Votes

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Answer: Warning messages on Apple M1 BigSur

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Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330