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[recount3] Merge gene counts tables from multiple projects (SRP)
recount3 recountWorkflow
updated 9 months ago by ▴ 1000 • written 10 months ago by ▴ 490
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Answer: Conversion of UniProt to Ensembl by James W. MacDonald 60k
I will provide an example below. But first, there is a vignette for biomaRt (actually two), and it has extensive examples of how to use the…
Comment: the difference between getGEO and getGEOSuppFiles by Fatemeh • 0
thank you!
Answer: the difference between getGEO and getGEOSuppFiles by James W. MacDonald 60k
When submitting data to GEO, you are supposed to provide both the raw data and a matrix of processed data. When you use `getGEO` you get th…
Comment: error running UniProt.ws by James W. MacDonald 60k
https://www.bioconductor.org/checkResults/3.15/bioc-LATEST/UniProt.ws/nebbiolo1-install.html
Comment: error running UniProt.ws by James W. MacDonald 60k
@marcelramos You have introduced a dependency on `BiocBaseUtils`, but that package is only available in devel.
Votes
Answer: the difference between getGEO and getGEOSuppFiles
Answer: the difference between getGEO and getGEOSuppFiles
Answer: TPM normalization starting with read counts
DEseq2 time-series design.
A: Importance of Order in Design Formula
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