updated 8 months ago by
Johannes Rainer
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written 8 months ago by
Christopher
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Answer: Filter genes by expression for voomLmFit
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`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…
Comment: How to get DMR for Infinium methylation EPIC v2
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You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`.
```
eset <- preprocessFunnorm(dat)
myAn…
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Ah, I just found the function JoinLayers.. I think this should help...
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It is possible that the hub genes are not directly related to the immune score but are instead related to other factors that are negatively…
Comment: SingleR annotation of several slots/patients
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Thank you for your comment & help. When I try to run it with clusters it complains about having multiple layers:
GetAssayData(kid.filt…
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