Showing : RNA • reset
1
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125
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Description of the headers obtained from the Eligos2 output
methylation RNA native epitranscriptomics
updated 10 weeks ago by ▴ 70 • written 10 weeks ago by ▴ 10
0
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1
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177
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Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 4 months ago by ★ 1.2k • written 4 months ago by • 0
0
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0
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205
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Cross-cultivar RNA-seq analysis
RNA Normalization
13 months ago • updated 12 months ago nancy • 0
0
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4
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465
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Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
13 months ago Nirad • 0
0
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3
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553
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Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 18 months ago by 45k • written 18 months ago by • 0
4
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3
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621
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 19 months ago by 59k • written 19 months ago by ▴ 20
2
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7
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433
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Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 24 months ago by 59k • written 24 months ago by • 0
1
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1
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250
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How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 2.1 years ago by 36k • written 2.1 years ago by • 0
0
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6
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359
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Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 2.2 years ago by 36k • written 2.2 years ago by • 0
0
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0
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382
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
2.9 years ago jmaanaki • 0
1
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1
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473
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how to filter genes in significant module?
RNA WGCNA filter
2.9 years ago modarzi ▴ 10
0
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2
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445
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DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 3.1 years ago by 36k • written 3.1 years ago by ▴ 10
2
votes
1
reply
339
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DESeq2 statistic and design
deseq2 RNA
updated 3.1 years ago by 36k • written 3.1 years ago by ▴ 10
5
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5
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606
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Association analysis between gene expression and Phenotype
rna singlecell limma
updated 3.1 years ago by ★ 27k • written 3.1 years ago by ▴ 20
2
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3
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588
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Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 3.1 years ago by 13k • written 3.1 years ago by ▴ 20
1
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0
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482
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Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
3.6 years ago l.brown ▴ 10
0
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0
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472
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R code for finding wobble/redundant positions in an RNA string
r code rna wobble
4.3 years ago fawazfebin ▴ 30
0
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1
reply
572
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Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 4.8 years ago by 36k • written 4.8 years ago by ▴ 20
0
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1
reply
1.0k
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RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 4.8 years ago by 36k • written 4.8 years ago by ▴ 20
1
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1
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727
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Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 5.0 years ago by ▴ 400 • written 5.0 years ago by ▴ 30
5
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4
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810
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Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 5.0 years ago by • 0 • written 5.0 years ago by ▴ 30
3
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6
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1.2k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 5.1 years ago by 59k • written 5.1 years ago by ▴ 20
6
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5
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2.4k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 5.1 years ago by 45k • written 5.1 years ago by ▴ 20
0
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0
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883
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Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
5.2 years ago Walter F. Baumann ▴ 10
3
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1
reply
1.1k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 5.7 years ago by ★ 27k • written 5.7 years ago by • 0
0
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4
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4.1k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 6.2 years ago by 36k • written 6.2 years ago by • 0
0
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2
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858
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Normalizzation indipentent data from RNAAeq experiment
rna normalization
7.6 years ago aristotele_m ▴ 30
27 results • Page 1 of 1
Recent ...
Replies
Comment: Quantile Normalization after rma or not? by Yang Shi • 0
Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…
Answer: how to understand cpm=1 and how filterByExpr works? by gowthamee • 0
I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…
Comment: different results in DESeq2 when comparing groups in two ways by zohreh.fazelan • 0
Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…
Comment: lmFit, continuous exposure, adjustment covariates by Gordon Smyth 45k
Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…
Comment: Handling of missing values in limma by Gordon Smyth 45k
limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…
Votes
A: redundant probe sets in Affymetrix HG-U219
Answer: Quantile Normalization after rma or not?
Answer: Quantile Normalization after rma or not?
Answer: Using featureCounts and downloading Rsubread
Answer: different results in DESeq2 when comparing groups in two ways
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