Showing : RNA • reset
0
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2
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432
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 5 months ago by ★ 2.0k • written 5 months ago by • 0
3
votes
6
replies
1.1k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
10 months ago Sara • 0
0
votes
0
replies
304
views
Correct GFF3 translation for FeatureCounts
RNASeq FeatureCounts Rna
11 months ago rridley3 • 0
1
vote
1
reply
406
views
Confused about design for RNA seq experiment
RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign
updated 12 months ago by ★ 3.4k • written 12 months ago by ▴ 20
0
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0
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492
views
Job: Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData RNA DifferentialExpression
13 months ago António Miguel de Jesus Domingues ▴ 490
0
votes
2
replies
577
views
Rsubread align --R session aborts
RNA Alignment Rsubread
13 months ago sreekalasn • 0
2
votes
1
reply
660
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123 Rna
updated 15 months ago by 48k • written 15 months ago by • 0
1
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2
replies
1.1k
views
Is it necessary to standardize Combat in R?
RNA Combat sva R
16 months ago takemoto • 0
1
vote
1
reply
549
views
Description of the headers obtained from the Eligos2 output
methylation RNA native epitranscriptomics
updated 18 months ago by ▴ 90 • written 18 months ago by ▴ 10
0
votes
1
reply
644
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 20 months ago by ★ 3.4k • written 20 months ago by • 0
0
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0
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451
views
Cross-cultivar RNA-seq analysis
RNA Normalization
2.4 years ago nancy • 0
0
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4
replies
992
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
2.4 years ago Nirad • 0
0
votes
3
replies
1.6k
views
Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 2.8 years ago by 48k • written 2.8 years ago by • 0
4
votes
3
replies
1.5k
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 2.9 years ago by 63k • written 2.9 years ago by ▴ 20
2
votes
7
replies
957
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 3.3 years ago by 63k • written 3.3 years ago by • 0
1
vote
1
reply
577
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 3.4 years ago by 40k • written 3.4 years ago by • 0
0
votes
6
replies
898
views
Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 3.6 years ago by 40k • written 3.6 years ago by • 0
0
votes
0
replies
632
views
Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
4.2 years ago jmaanaki • 0
1
vote
1
reply
1.0k
views
how to filter genes in significant module?
RNA WGCNA filter
4.2 years ago modarzi ▴ 10
0
votes
2
replies
710
views
DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 4.4 years ago by 40k • written 4.4 years ago by ▴ 10
2
votes
1
reply
647
views
DESeq2 statistic and design
deseq2 RNA
updated 4.4 years ago by 40k • written 4.4 years ago by ▴ 10
5
votes
5
replies
1.1k
views
Association analysis between gene expression and Phenotype
rna singlecell limma
updated 4.5 years ago by ★ 28k • written 4.5 years ago by ▴ 20
2
votes
3
replies
875
views
Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 4.5 years ago by 13k • written 4.5 years ago by ▴ 20
1
vote
0
replies
749
views
Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
4.9 years ago l.brown ▴ 10
0
votes
0
replies
738
views
R code for finding wobble/redundant positions in an RNA string
r code rna wobble
5.6 years ago fawazfebin ▴ 60
0
votes
1
reply
809
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 6.1 years ago by 40k • written 6.1 years ago by ▴ 20
0
votes
1
reply
1.2k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 6.2 years ago by 40k • written 6.2 years ago by ▴ 20
1
vote
1
reply
1.0k
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 6.3 years ago by ▴ 410 • written 6.3 years ago by ▴ 30
5
votes
4
replies
1.1k
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 6.4 years ago by • 0 • written 6.4 years ago by ▴ 40
3
votes
6
replies
1.7k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 6.4 years ago by 63k • written 6.4 years ago by ▴ 20
6
votes
5
replies
3.3k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 6.4 years ago by 48k • written 6.4 years ago by ▴ 20
0
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0
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1.3k
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
6.5 years ago Walter F. Baumann ▴ 10
3
votes
1
reply
1.5k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 7.0 years ago by ★ 28k • written 7.0 years ago by • 0
0
votes
4
replies
4.7k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 7.6 years ago by 40k • written 7.6 years ago by • 0
0
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2
replies
1.2k
views
Normalizzation indipentent data from RNAAeq experiment
rna normalization
9.0 years ago aristotele_m ▴ 30
35 results • Page 1 of 1
Recent ...
Replies
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…
Comment: DelayedArray::read_sparse_block by Koki ▴ 10
Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …
Comment: DelayedArray::read_sparse_block by Koki ▴ 10
Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…
Comment: DMRcate design by James W. MacDonald 63k
That's what identical context means.
Votes
Answer: What MetaPhlAn3 database was used in cMD 3?
Comment: Speeding up of DelayedArray::write_block()
Answer: DelayedArray::read_sparse_block
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
Comment: Timely differentially expressed genes
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