Showing : RNA • reset
0
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0
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115
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Cross-cultivar RNA-seq analysis
RNA Normalization
4 months ago nancy • 0
0
votes
4
replies
296
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
5 months ago Nirad • 0
0
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3
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322
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Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 10 months ago by 43k • written 10 months ago by • 0
4
votes
3
replies
377
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How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 11 months ago by 58k • written 11 months ago by ▴ 20
2
votes
7
replies
290
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 16 months ago by 58k • written 16 months ago by • 0
1
vote
1
reply
167
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 16 months ago by 34k • written 16 months ago by • 0
0
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6
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226
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Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 18 months ago by 34k • written 18 months ago by • 0
0
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0
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296
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Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
2.2 years ago jmaanaki • 0
1
vote
1
reply
331
views
how to filter genes in significant module?
RNA WGCNA filter
2.2 years ago modarzi ▴ 10
0
votes
2
replies
355
views
DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 2.4 years ago by 34k • written 2.4 years ago by ▴ 10
2
votes
1
reply
278
views
DESeq2 statistic and design
deseq2 RNA
updated 2.4 years ago by 34k • written 2.4 years ago by ▴ 10
5
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5
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470
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Association analysis between gene expression and Phenotype
rna singlecell limma
updated 2.5 years ago by ★ 27k • written 2.5 years ago by ▴ 20
2
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3
replies
393
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Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 2.5 years ago by 13k • written 2.5 years ago by ▴ 20
1
vote
0
replies
407
views
Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
2.9 years ago l.brown ▴ 10
0
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0
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413
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R code for finding wobble/redundant positions in an RNA string
r code rna wobble
3.6 years ago fawazfebin ▴ 30
0
votes
1
reply
529
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 4.1 years ago by 34k • written 4.1 years ago by ▴ 20
0
votes
1
reply
952
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 4.1 years ago by 34k • written 4.1 years ago by ▴ 20
1
vote
1
reply
643
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 4.3 years ago by ▴ 390 • written 4.3 years ago by ▴ 30
5
votes
4
replies
719
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 4.4 years ago by • 0 • written 4.4 years ago by ▴ 30
3
votes
6
replies
1.0k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 4.4 years ago by 58k • written 4.4 years ago by ▴ 20
6
votes
5
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2.1k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 4.4 years ago by 43k • written 4.4 years ago by ▴ 20
0
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0
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781
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
4.5 years ago Walter F. Baumann ▴ 10
3
votes
1
reply
917
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 5.0 years ago by ★ 27k • written 5.0 years ago by • 0
0
votes
4
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3.7k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 5.6 years ago by 34k • written 5.6 years ago by • 0
0
votes
2
replies
683
views
Normalizzation indipentent data from RNAAeq experiment
rna normalization
7.0 years ago aristotele_m ▴ 30
25 results • Page 1 of 1
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Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Answer: Getting a dataset that only contains the flow data within the gated area by Jiang, Mike ★ 1.3k
You didn't post your example code, so here is my best guess of your workflow > library(flowCore) > library(flowWorkspace) …
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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Scholar to Jiang, Mike ★ 1.3k
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Scholar to jbnrodriguez • 0
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