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rnaseqsamplesize
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RNASeq time course analysis, missing time points for control
RNASeqData
RnaSeqSampleSize
RNASeq
RNASeqPower
5 months ago
drewhaydensteele
• 0
3
votes
1
reply
291
views
Dataset imbalance
RNASeq
DifferentialExpression
RnaSeqSampleSizeData
RnaSeqSampleSize
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
Shaimaa Gamal
• 0
0
votes
1
reply
332
views
Interaction terms in DESeq2
RNASeqData
RnaSeqSampleSize
DESeq2
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
Mimi
• 0
0
votes
1
reply
398
views
Sample size estimation for RNAseq experiment with more than 2 conditions
SSPA
ssizeRNA
RnaSeqSampleSize
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Megan
• 0
0
votes
1
reply
235
views
Conversion of .sf to .rgel format for the salmon processed files with transcript to gene mapping.
RnaSeqSampleSize
updated 3 months ago by
ATpoint
★ 4.1k • written 3 months ago by
Anudev
• 0
0
votes
1
reply
401
views
Comparing RNASeq data from multiple studies
RNASeqData
RnaSeqSampleSize
RNASeqPower
RNASeq
updated 7 months ago by
Basti
▴ 780 • written 7 months ago by
Luke
• 0
1
vote
1
reply
264
views
Minimum datasets needed for meta analysis
RnaSeqSampleSize
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
Durga
▴ 10
7 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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