Bioconductor Rnaseqsamplesize

Showing : rnaseqsamplesize • reset

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289

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RNASeq DifferentialExpression RnaSeqSampleSizeData RnaSeqSampleSize

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by Shaimaa Gamal • 0

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235

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RnaSeqSampleSize

updated 3 months ago by ATpoint ★ 4.1k • written 3 months ago by Anudev • 0

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332

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RNASeqData RnaSeqSampleSize DESeq2

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Mimi • 0

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437

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RNASeqData RnaSeqSampleSize RNASeq RNASeqPower

5 months ago • updated 4 months ago drewhaydensteele • 0

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264

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RnaSeqSampleSize

updated 5 months ago by Basti ▴ 780 • written 5 months ago by Durga ▴ 10

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400

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RNASeqData RnaSeqSampleSize RNASeqPower RNASeq

updated 6 months ago by Basti ▴ 780 • written 7 months ago by Luke • 0

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398

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SSPA ssizeRNA RnaSeqSampleSize

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Megan • 0

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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Answer: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Votes

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

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