Bioconductor Rtandem

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peptide peptideidentification rTANDEM MSGFplus Alternatives

updated 21 months ago by shepherl 4.1k • written 21 months ago by vaddanki ▴ 10

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rtandem bug compilation error

6.4 years ago Ed Siefker ▴ 230

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Proteomics trigger rTANDEM Proteomics trigger rTANDEM

11.9 years ago Frederic Fournier ▴ 40

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Proteomics rTANDEM Proteomics rTANDEM

updated 11.9 years ago by Steve Lianoglou ★ 13k • written 11.9 years ago by Frederic Fournier ▴ 40

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Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

Answer: featureCounts segmentation fault with large chromosomes by vkkodali ▴ 10

Thanks to @yangliao this issue is fixed in subread v2.0.8

Comment: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion by ATpoint ★ 4.5k

For the general audience, reticulate / python (which basilisk depends on / wraps) requires explicit declaration of integers, so one needs i…

Answer: Average expression of genes across replicates by ATpoint ★ 4.5k

Not sure what you're asking. The average expression across all samples is what the `baseMean` column of `results()` returns. This is simply…

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Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?

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Popular Question to James W. MacDonald 67k