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sailfish
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reset
4
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9
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5.5k
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How to get DESeq2 sizefactors from data imported using tximport
deseq2
sailfish
tximport
updated 2.5 years ago by
IUH
• 0 • written 8.4 years ago by
stan
• 0
0
votes
6
replies
1.8k
views
Using tximport to read in data from sailfish experiment
tximport
sailfish
rnaseq
updated 9.0 years ago by
Michael Love
43k • written 9.0 years ago by
lina.faller
▴ 10
1
vote
5
replies
1.8k
views
Help inputing sailfish TPM files into tximport
tximport
sailfish
9.3 years ago
sjmonkley
▴ 40
7
votes
7
replies
3.7k
views
Using Sailfish estimated read-counts for DESeq2 analysis
deseq2
sailfish
differential gene expression
updated 11.0 years ago by
Simon Anders
★ 3.8k • written 11.0 years ago by
jceledon
• 0
4 results • Page
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Comment: featureCounts -L: high unassigned:mapq fraction
by
eja.gssssssse.r.m
• 0
If you re looking to enjoy a fun mobile experience, the 3 patti vegas game offers a seamless way to play classic card games on your phone. …
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Kevin Blighe
★ 4.0k
Hello Matthew, Thanks for the detailed description-this sounds like a classic challenge in sncRNA analysis, where piRNAs (and other tsRN…
Answer: VariantAnnotation does escape = within header string quotes
by
Kevin Blighe
★ 4.0k
Hi, Thanks for the minimal reproduction - this is very clear and confirms a bug in `VariantAnnotation::writeVcf()`. The issue is that th…
Answer: Setting up a DESeq2 Design with Paired Data
by
Kevin Blighe
★ 4.0k
Hello, Your design formula looks mostly correct to me, but I believe that `vessel_n` should be `replicate` (or whatever unique identifie…
Comment: Failure to download resources (MeSHDb) from AnnotationHub
by
Steve Lianoglou
★ 13k
That fixed it, thanks Lori!
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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