Showing : save file • reset
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browseGenome rtracklayer, save / export UCSC genome browser image e.g. as pdf
rtracklayer browseGenome save file image UCSC
updated 4.9 years ago by ▴ 10 • written 6.8 years ago by ▴ 60
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how to save file on local disk after applying predictCoding() function?
vcf predict coding save file VariantAnnotation
updated 7.3 years ago by ▴ 80 • written 7.3 years ago by ▴ 10
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Comment: airway package not compatible with R version 4.1.2 (2021-11-01) by ATpoint ▴ 970
`data(airway)` is your friend. The CRAN error comes from the fact that it is not a CRAN package, not that it is a version problem itself.
Comment: airway package not compatible with R version 4.1.2 (2021-11-01) by Lluís Revilla Sancho ▴ 660
I think it would help if you try again to install it via `BiocManager::install("airway")` and report the exact text output (without quittin…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by Michael Love 35k
This looks as expected with the control genes centered on the x-axis (yes, these can have high variance, this is discussed in work by Risso…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by argonvibio • 0
Hello Michael, and thank you for your reply. I have done as you described, estimating size factors with controlGenes before DESeq, but the…
Answer: DiffBind issue: zero values for all peaks in one chromosome by Rory Stark ★ 4.3k
Losing the reads for one tissue on one chromosome doesn't sound too good! I notice that you are using `DiffBind_3.0`, which is out of da…
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Emirical Bayesian shrinkage for dispertion/LFC estimation
C: Emirical Bayesian shrinkage for dispertion/LFC estimation
A: Emirical Bayesian shrinkage for dispertion/LFC estimation
Comment: airway package not compatible with R version 4.1.2 (2021-11-01)
Comment: universalmotif, question about enrich_motifs function and number of hits returne
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