Bioconductor Scater

Showing : scater • reset

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368

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scater runPCA

updated 4 weeks ago by alan.ocallaghan ▴ 160 • written 4 weeks ago by Najla Abassi • 0

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225

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scran bluster scater scuttle

updated 4 weeks ago by ATpoint ★ 4.0k • written 4 weeks ago by Dario Strbenac ★ 1.5k

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336

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scater

updated 12 weeks ago by alan.ocallaghan ▴ 160 • written 12 weeks ago by Dario Strbenac ★ 1.5k

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232

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scater

updated 12 weeks ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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6.5k

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runUMAP scater Matrix

updated 7 weeks ago by Hervé Pagès 16k • written 5 months ago by inzirio ▴ 10

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1.1k

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scuttle scater

updated 7 months ago by ATpoint ★ 4.0k • written 7 months ago by Abbi Edwards • 0

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859

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plotHeatmap scater

10 months ago Alina • 0

7 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0