Bioconductor Scater

Showing : scater • reset

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404

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scater runPCA

updated 6 weeks ago by alan.ocallaghan ▴ 160 • written 6 weeks ago by Najla Abassi • 0

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238

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scran bluster scater scuttle

updated 6 weeks ago by ATpoint ★ 4.1k • written 6 weeks ago by Dario Strbenac ★ 1.5k

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6.6k

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runUMAP scater Matrix

updated 9 weeks ago by Hervé Pagès 16k • written 5 months ago by inzirio ▴ 10

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375

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scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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250

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scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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1.1k

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scuttle scater

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Abbi Edwards • 0

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875

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plotHeatmap scater

10 months ago Alina • 0

7 results • Page 1 of 1

Recent ...

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Answer: Trim/Filter out-of-bounds GRanges

Comment: Help with running egsea()

Answer: How to save the DEXSeq results

Awards • All

Scholar to Michael Love 41k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k