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scde
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differential expression between clusters (in distinct "treatments") in scRNAseq
scater
limma
scde
scran
sc3
6.4 years ago
Bogdan
▴ 670
1
vote
5
replies
2.9k
views
Unable to install scde in ubuntu 16.04 , this is what happens when I install scde
scde
ubuntu
dependencies
R
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
aditya531996
• 0
0
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0
replies
1.6k
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SCDE for differential expression
scde
differential expression
single cell
9.3 years ago
mnaymik
▴ 10
3 results • Page
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Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
by
Michael Love
43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source
by
igkryycpinmshzugby
• 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source
by
James W. MacDonald
68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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