Showing : scran • reset
1
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Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
11 days ago • updated 10 days ago ATpoint ★ 4.1k
2
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1
reply
237
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Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran bluster scater scuttle
updated 5 weeks ago by ★ 4.1k • written 6 weeks ago by ★ 1.5k
0
votes
3
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442
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scran package: quickCluster and calculateSumFactors parallelization
BiocParallel scran
updated 3 months ago by ★ 4.1k • written 3 months ago by • 0
1
vote
2
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811
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ScRNAseq analysis scran :: quickcluster Error
scRNAseq quickcluster scRNA scran
5 months ago ruba-mahmoud • 0
0
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1
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359
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Speeding up large scale scRNAseq analyses in R and improve memory
scran
updated 8 months ago by ★ 4.1k • written 8 months ago by • 0
0
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2
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828
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runPCA in a SingleCellExperiment results ina colMeans error
scran SingleCellExperiment
10 months ago Lluís Revilla Sancho ▴ 730
2
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2
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5.5k
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scran ScoreMarkers throws a warning
scoreMarkers scran
updated 10 months ago by ▴ 740 • written 10 months ago by ★ 1.5k
2
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3
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1.3k
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P-value histogram of testLinearModel is not uniform
smart-seq2 scRNAseq scran
11 months ago • updated 10 months ago Lluís Revilla Sancho ▴ 730
8 results • Page 1 of 1
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Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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