Bioconductor Scran

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5.4k

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scoreMarkers scran

updated 10 months ago by Peter Hickey ▴ 740 • written 10 months ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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smart-seq2 scRNAseq scran

11 months ago • updated 10 months ago Lluís Revilla Sancho ▴ 730

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825

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scran SingleCellExperiment

10 months ago Lluís Revilla Sancho ▴ 730

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807

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scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

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437

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BiocParallel scran

updated 3 months ago by ATpoint ★ 4.1k • written 3 months ago by qwang178 • 0

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357

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scran

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Maximilian • 0

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232

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scran bluster scater scuttle

updated 5 weeks ago by ATpoint ★ 4.1k • written 5 weeks ago by Dario Strbenac ★ 1.5k

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148

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scran BiocParallel bluster

10 days ago • updated 9 days ago ATpoint ★ 4.1k

8 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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