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scran
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Reproducibility issue with scran together with lapply and BiocParallel
scran
BiocParallel
bluster
6 days ago • updated 5 days ago
ATpoint
★ 4.1k
2
votes
1
reply
228
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 5 weeks ago by
ATpoint
★ 4.1k • written 5 weeks ago by
Dario Strbenac
★ 1.5k
0
votes
3
replies
425
views
scran package: quickCluster and calculateSumFactors parallelization
BiocParallel
scran
updated 3 months ago by
ATpoint
★ 4.1k • written 3 months ago by
qwang178
• 0
1
vote
2
replies
792
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
4 months ago
ruba-mahmoud
• 0
0
votes
1
reply
353
views
Speeding up large scale scRNAseq analyses in R and improve memory
scran
updated 8 months ago by
ATpoint
★ 4.1k • written 8 months ago by
Maximilian
• 0
0
votes
2
replies
817
views
runPCA in a SingleCellExperiment results ina colMeans error
scran
SingleCellExperiment
10 months ago
Lluís Revilla Sancho
▴ 730
2
votes
2
replies
5.4k
views
scran ScoreMarkers throws a warning
scoreMarkers
scran
updated 10 months ago by
Peter Hickey
▴ 740 • written 10 months ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.3k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
10 months ago
Lluís Revilla Sancho
▴ 730
8 results • Page
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Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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