Bioconductor Seqgsea

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limma deseq2 seqgsea sva deseq

5.5 years ago kentfung ▴ 20

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seqgsea

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by jial2 • 0

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1.3k

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goseq SeqGSEA goseq SeqGSEA

updated 9.1 years ago by Xi Wang • 0 • written 11.6 years ago by Julie Leonard ▴ 110

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Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI

updated 10.8 years ago by Steve Lianoglou ★ 13k • written 10.8 years ago by Leif Väremo ▴ 70

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Infrastructure PGSEA GSEABase SeqGSEA Infrastructure PGSEA GSEABase SeqGSEA

updated 10.8 years ago by Julian Gehring ★ 1.3k • written 10.8 years ago by enricoferrero ▴ 660

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

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