Bioconductor Seqgsea

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1.3k

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limma deseq2 seqgsea sva deseq

6.2 years ago kentfung ▴ 20

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1.2k

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seqgsea

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by jial2 • 0

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1.4k

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goseq SeqGSEA goseq SeqGSEA

updated 9.8 years ago by Xi Wang • 0 • written 12.3 years ago by Julie Leonard ▴ 110

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Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI

updated 11.5 years ago by Steve Lianoglou ★ 13k • written 11.5 years ago by Leif Väremo ▴ 70

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Infrastructure PGSEA GSEABase SeqGSEA Infrastructure PGSEA GSEABase SeqGSEA

updated 11.5 years ago by Julian Gehring ★ 1.3k • written 11.5 years ago by enricoferrero ▴ 680

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Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

You are. The reason I pointed you to `forgeBSgenomeDataPkgFromTwobitFile` is because it's much simpler, doesn't require a seed file, and is…

Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by mat149 ▴ 80

I've tried the following, but I must be missing something: setwd("C:\\Users\\....\\wd\\dump\\seqs_srcdir") e122<-readDNA…

Comment: readBam vs read_bam_insert_metrics by rtrivedi1 ▴ 10

Thanks for the answer.

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Thank you so much for your helpful response! I have a follow-up question regarding preprocessing of the count matrix. Should steps like ge…

Comment: readDNAStringSet with non DNA characters by Aidan ▴ 60

I would try to avoid converting to and from `character` objects, you'll lose the main point of having objects as `XString`/`XStringSet`. `…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

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