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seqlogo
•
reset
1
vote
4
replies
915
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Error of PWM not colsum to 1 from package DiffLogo or seqLogo
seqLogo
DiffLogo
20 months ago
zhxiaokang
▴ 20
0
votes
1
reply
1.2k
views
PWM with columns that add up to 1
biostrings
seqlogo
pwm
updated 7.5 years ago by
Marcel Ramos
690 • written 7.5 years ago by
clausdkuhn
• 0
0
votes
5
replies
1.6k
views
Plotting protein position weighted matrices in seqLogo and DiffLogo
seqlogo
DiffLogo
updated 7.7 years ago by
mgledi
• 0 • written 7.8 years ago by
jeffb
• 0
0
votes
0
replies
781
views
Change chars ACGT to ACGU in seqLogo
seqLogo
seqLogo
10.4 years ago
Fabrice Tourre
▴ 970
0
votes
0
replies
793
views
cosmo for particular sequences
seqLogo
seqLogo
11.6 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
seqLogo package: sequence logo graph with background frequency?
seqLogo
seqLogo
12.4 years ago
Tim Smith
★ 1.1k
0
votes
3
replies
2.4k
views
Drawing multiple sequence logos with seqLogo?
graph
seqLogo
graph
seqLogo
13.7 years ago
Nenad Bartonicek
▴ 60
7 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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