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pwm
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universalmotif, question about enrich_motifs function and number of hits returned
universalmotif
scanning
enrich_motifs
PWM
3.3 years ago
alexandre.blais
▴ 50
2
votes
0
replies
2.3k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm
pfm
jaspar
motifdb
updated 6.4 years ago by
Bioconductor Community
0 • written 6.5 years ago by
chrisclarkson100
▴ 50
0
votes
0
replies
1.0k
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
6.5 years ago
rbronste
▴ 60
2
votes
1
reply
2.8k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 7.6 years ago by
Ge Tan
▴ 20 • written 7.7 years ago by
chrisclarkson100
▴ 50
0
votes
1
reply
1.6k
views
PWM with columns that add up to 1
biostrings
seqlogo
pwm
updated 8.5 years ago by
Marcel Ramos
700 • written 8.5 years ago by
clausdkuhn
• 0
0
votes
0
replies
1.0k
views
maxScore calculation for 'log2probratio' and 'prob' type PWMs
biostrings
pwm
8.7 years ago
Stefanie Tauber
▴ 40
0
votes
3
replies
1.8k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.5 years ago
vinod.acear
▴ 50
7 results • Page
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Comment: Can't install BioC packages (and manager) behind firewall
by
Marcel Ramos
700
Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…
Comment: Limma trend with limpa
by
Alejandro
• 0
Dear Gordon, Thank you very much!
Answer: DESeq2 from phyloseq error
by
asafpr
• 0
Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …
Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
• 0
Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…
Answer: Limma trend with limpa
by
Gordon Smyth
52k
Dear Alejandro, Thanks for your interest. No, one does not set `trend=TRUE` when running eBayes() after dpcDE(). The variance trends are …
Votes
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
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