Bioconductor Sesame

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methylation sesame methylationArrayAnalysis

updated 3 months ago by zhouwanding ▴ 20 • written 3 months ago by ramiro.barrantes ▴ 10

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509

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MethylationArray methylation sesame methylationArrayAnalysis

3 months ago ramiro.barrantes ▴ 10

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457

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MethylationArray sesameData sesame

updated 18 days ago by alyssa-daniel • 0 • written 3 months ago by ramiro.barrantes ▴ 10

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sesame EPICv2manifest epicv2

5 months ago luca.s ▴ 50

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989

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sesame BatchEffect MethylationArray

updated 7 months ago by zhouwanding ▴ 20 • written 7 months ago by Seungmin • 0

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1.5k

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 9 months ago by aldea85 • 0 • written 13 months ago by Courtney • 0

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sesameData sesameDataCache sesame ExperimentalHub

updated 12 months ago by alyssa-daniel • 0 • written 13 months ago by alos_diallo • 0

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sesame sesameData

updated 2.1 years ago by zhouwanding ▴ 20 • written 2.1 years ago by jasmine_chappell • 0

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1.3k

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GenomicRanges sesame sesameData GenomicFeatures

3.3 years ago Pratik Mehta ▴ 10

9 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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