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sesame
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sigDF object in sesame
sesame
sesameData
4 weeks ago
Ramiro
• 0
0
votes
13
replies
1.9k
views
When doing differential methylation using the sesame package, seems to only go one way
methylation
sesame
methylationArrayAnalysis
updated 12 months ago by
zhouwanding
▴ 20 • written 12 months ago by
ramiro.barrantes
▴ 10
1
vote
2
replies
1.0k
views
In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray
methylation
sesame
methylationArrayAnalysis
12 months ago
ramiro.barrantes
▴ 10
0
votes
3
replies
809
views
Open Sesame: in what genes are my differentially methylated probes!!
MethylationArray
sesameData
sesame
updated 9 months ago by
alyssa-daniel
• 0 • written 13 months ago by
ramiro.barrantes
▴ 10
1
vote
4
replies
2.2k
views
SeSAMe DMR for EPIC V2
sesame
EPICv2manifest
epicv2
updated 9 weeks ago by
MargaretJDinan
• 0 • written 15 months ago by
luca.s
▴ 50
0
votes
2
replies
2.0k
views
Batch effect correction: methylome data
sesame
BatchEffect
MethylationArray
updated 16 months ago by
zhouwanding
▴ 20 • written 16 months ago by
Seungmin
• 0
3
votes
5
replies
2.1k
views
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
sesame
IlluminaHumanMethylationEPICv2anno.20a1.hg38
methylationEPICv2.0
EpicV2
updated 18 months ago by
aldea85
• 0 • written 22 months ago by
Courtney
▴ 10
0
votes
4
replies
2.0k
views
sesameDataCache is not work properly on my system
sesameData
sesameDataCache
sesame
ExperimentalHub
updated 6 months ago by
Samreen
• 0 • written 22 months ago by
alos_diallo
• 0
0
votes
3
replies
1.5k
views
Difficulty creating summarized experiment
sesame
sesameData
updated 2.8 years ago by
zhouwanding
▴ 20 • written 2.8 years ago by
jasmine_chappell
• 0
5
votes
2
replies
1.6k
views
How to build a GRangesList where each GRanges element is a CDS coordinate of gene transcripts?
GenomicRanges
sesame
sesameData
GenomicFeatures
4.0 years ago
Pratik Mehta
▴ 10
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Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
abaed
• 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub
by
shepherl
4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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