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shrna
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0
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1.7k
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Using edgeR for small shRNA-seq screen analysis
edger
shrna
8.0 years ago
sirintra
▴ 10
2
votes
2
replies
2.1k
views
Analysis of shRNA screen data
shrna
edger
deseq2
differential expression
normalized counts
8.6 years ago
Jane Merlevede
▴ 90
1
vote
1
reply
1.1k
views
limma for shRNA dropout screen analysis?
limma
gmap
shRNA
dropout screen
updated 8.7 years ago by
Aaron Lun
★ 28k • written 8.7 years ago by
Anna Dvorkin
▴ 40
4
votes
4
replies
1.8k
views
edgeR:processAmplicons barcode match only 57% when it should be 100% -- I artificially inserted them -- are there other assumptions
edgeR
processamplicons
shrna
updated 9.2 years ago by
thomas.leete
• 0 • written 9.4 years ago by
Anne Deslattes Mays
▴ 10
0
votes
5
replies
3.0k
views
example fastq file, sampleAnnotaition and Hairpin file for shRNAseq/EdgeR tool
shRNAseq
edgeR
shRNA
updated 9.4 years ago by
Gordon Smyth
52k • written 9.4 years ago by
KB
▴ 50
5 results • Page
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Answer: Automatically install dependencies
by
shepherl
4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Votes
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
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