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sigpathway
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master gene list for pathway analysis
pathway analysis
sigpathway
Genesets_EntrezGeneIDs.RData
5.6 years ago
maria
• 0
0
votes
4
replies
2.8k
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PANTHER in R.... Gene lists in sigPathway?
sigPathway
sigPathway
12.0 years ago
Voke AO
▴ 760
0
votes
2
replies
1.9k
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help in downloading some packages.
goTools
sigPathway
topGO
goTools
sigPathway
topGO
updated 13.6 years ago by
Michael Dondrup
▴ 550 • written 13.6 years ago by
Veerendra GP
▴ 100
0
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0
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931
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computer out of memory when using sigpathway
Microarray
Annotation
sigPathway
Microarray
Annotation
sigPathway
14.0 years ago
山中程
▴ 10
0
votes
0
replies
814
views
sigpathway pheno object
sigPathway
sigPathway
14.9 years ago
Adrian Johnson
▴ 330
0
votes
0
replies
779
views
sigPathway on Agilent data
sigPathway
sigPathway
15.9 years ago
Srinivas Iyyer
▴ 600
0
votes
3
replies
889
views
How can I make genesets for sigpathway
sigPathway
sigPathway
updated 16.2 years ago by
James W. MacDonald
65k • written 16.2 years ago by
Srinivas Iyyer
▴ 600
7 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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