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Technical normalization of single channel array data with Limma?
limma
single
genepix
normalization
technical
8.6 years ago
dario.veneziano
• 0
2
votes
7
replies
2.6k
views
How to run runNMF in parallel?
scater
single
SingleCellExperiment
updated 2.5 years ago by
Aaron Lun
★ 28k • written 3.5 years ago by
p.joshi
▴ 40
2
votes
4
replies
3.9k
views
differential expression for Single-cell RNAseq data using edgeR
edgeR
single
scRNAseq
2.8 years ago • updated 2.7 years ago
mbenegas
• 0
1
vote
3
replies
2.6k
views
Unable to GetGRangesFromEnsDb
single
GenomeInfoDb
updated 16 months ago by
Yichao
• 0 • written 2.3 years ago by
Francesco Monticolo
• 0
1
vote
1
reply
1.1k
views
scran computeSumFactors showing error
scran
single
cell
updated 2.5 years ago by
Aaron Lun
★ 28k • written 2.5 years ago by
hemantcnaik
• 0
0
votes
1
reply
1.2k
views
Diagnostic plots for single-channel custom array with limma.
limma
custom
diagnostic plots
single
updated 8.6 years ago by
Gordon Smyth
50k • written 8.6 years ago by
dario.veneziano
• 0
6 results • Page
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Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
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