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10 months ago
p.joshi
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updated 6.0 years ago by
Gordon Smyth
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written 6.0 years ago by
dario.veneziano
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Comment: Macbook M1 install genefilter failed
by
Alexandre
•
0
Michael,
Do you have perhaps R binary installed for Intel chips ? Mine is arm64.pkg. I read somehwhere the binary for Intel chips works f…
Comment: Macbook M1 install genefilter failed
by
Alexandre
•
0
[n] stops the installation. I've tried to force since it is installed already and then I tried `none` as you said.
> BiocManager::inst…
Answer: Error in makeTxDbFromGFF(txomeInfo$gtf)
by
Michael Love
34k
I see that tximeta found a linked transcriptome. Can you show this part of your code as well? How did you create the `linkedTxome`?
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
by
Gordon Smyth
43k
You need to start by doing an ordinary paired analysis.
Comment: Recalculated abundance data output table with DEseq2
by
Michael Love
34k
Yes, DESeq() then results(). When you print the table it will say MLE.
No we don’t have a function to do that.
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