8 months ago
Francesco Monticolo
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updated 10 months ago by
Aaron Lun
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written 10 months ago by
hemantcnaik
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updated 7.0 years ago by
Gordon Smyth
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written 7.0 years ago by
dario.veneziano
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Comment: All genes in a set for gseGO funtion
by
James W. MacDonald
61k
This is the part I was talking about earlier. I actually get 231 genes for that GO term. And if we run `gseGO` under the debugger, that's w…
Comment: All genes in a set for gseGO funtion
by
Adelyn
•
0
Take GO:0005840 for example:
gseGO results give a setSize of 28, Leading edge stats of tags=86%, list=22%, signal=69%, and the list of gen…
Answer: Does DeSeq2 make comparisons between all samples vs. all controls, or between ma
by
James W. MacDonald
61k
What the quote from the vignette is saying is that if you have say four groups, then it's usually best to keep them all in the model and ma…
Comment: GDCprepare() - R Session Aborted
by
spyrouglykeria
•
0
The problem was my RAM memory. I had an upgrade and then I also changed the limit of RAM memory usage of the RStudio.
Comment: All genes in a set for gseGO funtion
by
James W. MacDonald
61k
You would have to provide an example.
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