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Unable to GetGRangesFromEnsDb
single
GenomeInfoDb
4 months ago
Francesco Monticolo
• 0
1
vote
1
reply
186
views
scran computeSumFactors showing error
scran
single
cell
updated 6 months ago by
Aaron Lun
★ 27k • written 6 months ago by
hemantcnaik
• 0
2
votes
4
replies
788
views
differential expression for Single-cell RNAseq data using edgeR
edgeR
single
scRNAseq
10 months ago • updated 8 months ago
mbenegas
• 0
2
votes
7
replies
772
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How to run runNMF in parallel?
scater
single
SingleCellExperiment
updated 6 months ago by
Aaron Lun
★ 27k • written 18 months ago by
p.joshi
▴ 20
0
votes
1
reply
807
views
Diagnostic plots for single-channel custom array with limma.
limma
custom
diagnostic plots
single
updated 6.7 years ago by
Gordon Smyth
45k • written 6.7 years ago by
dario.veneziano
• 0
5
votes
4
replies
1.2k
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Technical normalization of single channel array data with Limma?
limma
single
genepix
normalization
technical
6.7 years ago
dario.veneziano
• 0
6 results • Page
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Answer: ashr vs apeglm for interaction data
by
Michael Love
36k
Can you show the MA plot for these two analyses? Also for a gene with a large LFC from ashr, can you show plotCounts?
Comment: Robust Multi-array Average could get negative value or not?
by
Yang Shi
• 0
Got the point sir~ Thanks so much!
Comment: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
Because it's a small number.
Comment: Robust Multi-array Average could get negative value or not?
by
Yang Shi
• 0
Thanks for your quick reply sir! Could you tell me why 4 which you selected here?
Answer: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…
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Answer: Robust Multi-array Average could get negative value or not?
Answer: Robust Multi-array Average could get negative value or not?
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
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