Showing : singleR • reset
0
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4
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3.6k
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error in (function (classes, fdef, mtable) unable to find an inherited method for function logNormCounts for signature Seurat
seurat singleR
updated 10 months ago by • 0 • written 4.4 years ago by • 0
0
votes
1
reply
315
views
SingleR Book Not Found
SingleR
updated 5 months ago by ▴ 740 • written 5 months ago by • 0
1
vote
2
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936
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Reduce single cell experiment size to use as reference for annotation with SingleR
SingleR SingleCellExperiment
4 months ago elgomez • 0
0
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3
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488
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dittobarplot Var error
RNASeq ditto dittoSeq SingleR
written 3 months ago by • 0
1
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2
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778
views
trying to add SingleR label to Seurat Object fails
SingleR Seurat
updated 5 months ago by ★ 4.1k • written 5 months ago by ★ 1.5k
0
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2
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904
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Error in SingleR, no common genes between 'test' and 'ref'
singleR SingleCellExperiment SingleCellData
10 months ago Matvii Mykhailichenko • 0
0
votes
4
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6.0k
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SingleR Label.Ont
SingleR
updated 20 days ago by • 0 • written 7 months ago by • 0
2
votes
2
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2.6k
views
After having the output from SingleR for cell type annotation, what's the next step to assign the cell type to each cluster
SingleCellSignalR SingleCellWorkflow SingleR
updated 5 months ago by ★ 1.5k • written 3.0 years ago by ▴ 10
2
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4
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1.3k
views
SingleR annotation of several slots/patients
SingleR
written 5 months ago by ▴ 40
0
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0
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530
views
what should be the input for SingleR() automatic cell type annotation?
SingleR
11 months ago Yijing • 0
1
vote
4
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1.7k
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JoinLayers function for Seurat Object for annotation with SingleR
SingleR SeuratscRNA
written 4 months ago by ▴ 40
0
votes
1
reply
790
views
SingleR error with multiple references
SingleR
updated 11 months ago by • 0 • written 17 months ago by • 0
12 results • Page 1 of 1
Recent ...
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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