Showing : singleR • reset
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error in (function (classes, fdef, mtable) unable to find an inherited method for function logNormCounts for signature Seurat
seurat singleR
updated 10 months ago by • 0 • written 4.5 years ago by • 0
2
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4
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1.4k
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SingleR annotation of several slots/patients
SingleR
written 5 months ago by ▴ 40
1
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4
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1.8k
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JoinLayers function for Seurat Object for annotation with SingleR
SingleR SeuratscRNA
written 5 months ago by ▴ 40
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3
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543
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dittobarplot Var error
RNASeq ditto dittoSeq SingleR
written 4 months ago by • 0
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3
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8.5k
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SingleR Label.Ont
SingleR
updated 6 days ago by • 0 • written 8 months ago by • 0
0
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2
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939
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Error in SingleR, no common genes between 'test' and 'ref'
singleR SingleCellExperiment SingleCellData
10 months ago Matvii Mykhailichenko • 0
1
vote
2
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956
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Reduce single cell experiment size to use as reference for annotation with SingleR
SingleR SingleCellExperiment
5 months ago elgomez • 0
1
vote
2
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837
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trying to add SingleR label to Seurat Object fails
SingleR Seurat
updated 6 months ago by ★ 4.1k • written 6 months ago by ★ 1.5k
2
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2
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2.6k
views
After having the output from SingleR for cell type annotation, what's the next step to assign the cell type to each cluster
SingleCellSignalR SingleCellWorkflow SingleR
updated 6 months ago by ★ 1.5k • written 3.0 years ago by ▴ 10
0
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1
reply
324
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SingleR Book Not Found
SingleR
updated 5 months ago by ▴ 740 • written 5 months ago by • 0
0
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1
reply
809
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SingleR error with multiple references
SingleR
updated 11 months ago by • 0 • written 18 months ago by • 0
0
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0
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548
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what should be the input for SingleR() automatic cell type annotation?
SingleR
11 months ago Yijing • 0
12 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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