Bioconductor Singlecellmultimodal

Showing : singlecellmultimodal • reset

1

vote

1

reply

1.6k

views

labels PBMC SingleCellMultiModal 10X

updated 6 months ago by ATpoint ★ 5.0k • written 6 months ago by javier.ruizramirez • 0

2

votes

3

replies

2.9k

views

SingleCellMultiModal ensembldb rtracklayer Annotation

updated 2.7 years ago by rbj • 0 • written 2.9 years ago by Jake ▴ 10

0

votes

1

reply

1.2k

views

SingleCell SingleCellMultiModal allele

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by oliver.crook • 0

0

votes

0

replies

1.1k

views

SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST

3.3 years ago Nik Tuzov ▴ 90

4 results • Page 1 of 1

Recent ...

Replies

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

Awards • All