Biostar 10X

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DropletUtils emptyDrops 10x

updated 8 months ago by Aaron Lun ★ 27k • written 8 months ago by Peter Hickey ▴ 470

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 14 months ago by Michael Love 34k • written 14 months ago by vincent.croset ▴ 20

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10x scrna-seq

updated 2.4 years ago by Aaron Lun ★ 27k • written 2.4 years ago by jma1991 ▴ 60

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single-cell 10X Cell calling DropletUtils cellranger

updated 2.5 years ago by Aaron Lun ★ 27k • written 2.5 years ago by xingxd16 ▴ 20

4 results • Page 1 of 1

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Answer: Combining two groups in contrast deseq2 by Michael Love 34k

There are some examples in `?results`. It sounds like you want a numeric contrast.

Comment: Gradient dotplot by sophieagger • 0

That's smart, I'm a bit worried that it'll break my computer if I get enough levels in there to make me happy, but I'll give it a try.

Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0

Hi Professor Smyth, Thank you very much for the code. That has solved my problem. All the best. Field

Comment: Understanding output of Negative Binomial in DESeq2 by synat.keam • 0

Thank, Senior. sorry for cross posting as I was thinking in case I got different opinion, but the explanation was clear from Biostar. thank…

Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

Cross posted to Biostars https://www.biostars.org/p/9490039/

Votes

Comment: Gradient dotplot

Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi

Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Answer: Warning messages on Apple M1 BigSur

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Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330