Bioconductor 10X

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308

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SingleCell emptyDrops 10X

updated 4 months ago by Peter Hickey ▴ 650 • written 5 months ago by sandra.garces.19 • 0

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314

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RNAseq 10X

6 months ago wt215 • 0

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1.5k

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DropletUtils emptyDrops scRNA scRNAseq 10x

14 months ago • updated 13 months ago Peter Hickey ▴ 650

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800

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DropletUtils emptyDrops 10x

updated 2.7 years ago by Aaron Lun ★ 28k • written 2.7 years ago by Peter Hickey ▴ 650

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993

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deseq2 zinbwave 10X scRNA-seq Differential expression

updated 3.2 years ago by Michael Love 40k • written 3.2 years ago by vincent.croset ▴ 20

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1.7k

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10x scrna-seq

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by jma1991 ▴ 70

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6.2k

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single-cell 10X Cell calling DropletUtils cellranger

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by xingxd16 ▴ 20

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Answer: tximport error: vroom by Michael Love 40k

Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).

Comment: tximport error: vroom by Kevin Blighe 3.8k

Cross-posted: https://www.biostars.org/p/9576578/

Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Votes

Comment: Speeding up of DelayedArray::write_block()

Unclear of calculating correlations with case+control samples together

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

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Popular Question to mattia pelizzola ▴ 200