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singler
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3.6k
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error in (function (classes, fdef, mtable) unable to find an inherited method for function logNormCounts for signature Seurat
seurat
singleR
updated 10 months ago by
Marco
• 0 • written 4.4 years ago by
mathai.c
• 0
0
votes
1
reply
315
views
SingleR Book Not Found
SingleR
updated 5 months ago by
Peter Hickey
▴ 740 • written 5 months ago by
jgattiker
• 0
1
vote
2
replies
935
views
Reduce single cell experiment size to use as reference for annotation with SingleR
SingleR
SingleCellExperiment
4 months ago
elgomez
• 0
0
votes
3
replies
481
views
dittobarplot Var error
RNASeq
ditto
dittoSeq
SingleR
written 3 months ago by
Fayrouz
• 0
1
vote
2
replies
768
views
trying to add SingleR label to Seurat Object fails
SingleR
Seurat
updated 5 months ago by
ATpoint
★ 4.1k • written 5 months ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
901
views
Error in SingleR, no common genes between 'test' and 'ref'
singleR
SingleCellExperiment
SingleCellData
10 months ago
Matvii Mykhailichenko
• 0
0
votes
4
replies
5.4k
views
SingleR Label.Ont
SingleR
updated 18 days ago by
lisia
• 0 • written 7 months ago by
saeed.khalili
• 0
2
votes
2
replies
2.6k
views
After having the output from SingleR for cell type annotation, what's the next step to assign the cell type to each cluster
SingleCellSignalR
SingleCellWorkflow
SingleR
updated 5 months ago by
Assa Yeroslaviz
★ 1.5k • written 3.0 years ago by
FantasticAI
▴ 10
2
votes
4
replies
1.3k
views
SingleR annotation of several slots/patients
SingleR
written 5 months ago by
Bine
▴ 40
0
votes
0
replies
529
views
what should be the input for SingleR() automatic cell type annotation?
SingleR
11 months ago
Yijing
• 0
1
vote
4
replies
1.7k
views
JoinLayers function for Seurat Object for annotation with SingleR
SingleR
SeuratscRNA
written 4 months ago by
Bine
▴ 40
0
votes
1
reply
787
views
SingleR error with multiple references
SingleR
updated 11 months ago by
Irish
• 0 • written 17 months ago by
carlo
• 0
12 results • Page
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
You seem to have the misunderstanding that you can change the design matrix but keep all the other code unchanged. The contrasts are comput…
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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