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I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
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If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
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This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
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