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Showing :
snpmatrix
•
reset
0
votes
0
replies
825
views
Parsing through snp matrix
snpmatrix
GGI
6.9 years ago
GENOMIC_region
• 0
0
votes
0
replies
716
views
Error in snpStats::read.pedfile: GeneGeneInter
snpmatrix
ped
8.1 years ago
GENOMIC_region
• 0
0
votes
0
replies
2.3k
views
snpStats/GWASTools conversion
cdf
convert
snpMatrix
snpStats
GWASTools
cdf
convert
snpMatrix
snpStats
GWASTools
12.4 years ago
Stephanie M. Gogarten
▴ 890
0
votes
5
replies
4.5k
views
how to convert genotype snp matrix to nucleotide genotypes?
SNP
convert
snpMatrix
SNP
convert
snpMatrix
updated 12.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.8 years ago by
Tereza Jezkova UNLV
▴ 20
0
votes
1
reply
1.8k
views
col.summary error in snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
updated 12.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.9 years ago by
Tereza Jezkova - personal
▴ 10
0
votes
6
replies
7.1k
views
Calculate heterozygosity % using SNP genotype data
SNP
snpMatrix
SNP
snpMatrix
updated 13.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.6 years ago by
gowtham
▴ 210
0
votes
3
replies
3.9k
views
GWAS with Affymetrix SNP 6.0
SNP
oligo
snpMatrix
snpStats
SNP
oligo
snpMatrix
snpStats
updated 13.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.7 years ago by
David Hervás
▴ 20
0
votes
1
reply
1.9k
views
convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
SNP
convert
GGtools
snpMatrix
SNP
convert
GGtools
snpMatrix
updated 14.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.7 years ago by
Mao Jianfeng
▴ 290
0
votes
1
reply
1.4k
views
Problems Reading SNPs into snpMatrix
SNP
snpMatrix
SNP
snpMatrix
updated 14.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.8 years ago by
Chris K. Fuller
▴ 10
0
votes
1
reply
1.2k
views
crlmm and snpMatrix
snpMatrix
crlmm
snpMatrix
crlmm
updated 15.7 years ago by
Benilton Carvalho
★ 4.3k • written 15.7 years ago by
Tim Rayner
▴ 270
0
votes
0
replies
1.1k
views
major alterations to GGdata/GGtools planned
SNP
snpMatrix
cycle
SNP
snpMatrix
cycle
17.9 years ago
Vincent J. Carey, Jr.
6.7k
11 results • Page
1 of 1
Recent ...
Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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chirag.parsania
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