Bioconductor Snpmatrix

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snpmatrix GGI

6.9 years ago GENOMIC_region • 0

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snpmatrix ped

8.1 years ago GENOMIC_region • 0

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cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools

12.4 years ago Stephanie M. Gogarten ▴ 890

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SNP convert snpMatrix SNP convert snpMatrix

updated 12.8 years ago by Vincent J. Carey, Jr. 6.7k • written 12.8 years ago by Tereza Jezkova UNLV ▴ 20

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SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats

updated 12.9 years ago by Vincent J. Carey, Jr. 6.7k • written 12.9 years ago by Tereza Jezkova - personal ▴ 10

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SNP snpMatrix SNP snpMatrix

updated 13.6 years ago by Vincent J. Carey, Jr. 6.7k • written 13.6 years ago by gowtham ▴ 210

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SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats

updated 13.7 years ago by Vincent J. Carey, Jr. 6.7k • written 13.7 years ago by David Hervás ▴ 20

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SNP convert GGtools snpMatrix SNP convert GGtools snpMatrix

updated 14.7 years ago by Vincent J. Carey, Jr. 6.7k • written 14.7 years ago by Mao Jianfeng ▴ 290

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SNP snpMatrix SNP snpMatrix

updated 14.8 years ago by Vincent J. Carey, Jr. 6.7k • written 14.8 years ago by Chris K. Fuller ▴ 10

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snpMatrix crlmm snpMatrix crlmm

updated 15.7 years ago by Benilton Carvalho ★ 4.3k • written 15.7 years ago by Tim Rayner ▴ 270

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SNP snpMatrix cycle SNP snpMatrix cycle

17.9 years ago Vincent J. Carey, Jr. 6.7k

11 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey ▴ 760