Showing : snpmatrix • reset
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Parsing through snp matrix
snpmatrix GGI
5.1 years ago GENOMIC_region • 0
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506
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Error in snpStats::read.pedfile: GeneGeneInter
snpmatrix ped
6.3 years ago GENOMIC_region • 0
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1.8k
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snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
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5
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3.7k
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how to convert genotype snp matrix to nucleotide genotypes?
SNP convert snpMatrix SNP convert snpMatrix
updated 11.0 years ago by 6.7k • written 11.0 years ago by ▴ 20
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1.4k
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col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.1 years ago by 6.7k • written 11.1 years ago by ▴ 10
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6
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5.6k
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Calculate heterozygosity % using SNP genotype data
SNP snpMatrix SNP snpMatrix
updated 11.8 years ago by 6.7k • written 11.8 years ago by ▴ 210
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3
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2.8k
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 20
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1
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1.5k
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convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
SNP convert GGtools snpMatrix SNP convert GGtools snpMatrix
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 290
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1
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1.1k
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Problems Reading SNPs into snpMatrix
SNP snpMatrix SNP snpMatrix
updated 13.0 years ago by 6.7k • written 13.0 years ago by ▴ 10
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1
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903
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crlmm and snpMatrix
snpMatrix crlmm snpMatrix crlmm
updated 13.9 years ago by ★ 4.3k • written 13.9 years ago by ▴ 270
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879
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major alterations to GGdata/GGtools planned
SNP snpMatrix cycle SNP snpMatrix cycle
16.1 years ago Vincent J. Carey, Jr. 6.7k
11 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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