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spikein
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Analysis of transcription inhibition with DESeq2
SpikeIn
DESeq2
Normalization
written 4 weeks ago by
ADopico
• 0
0
votes
1
reply
327
views
Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn
RUVSeq
DESeq2
RUV
updated 10 weeks ago by
Michael Love
42k • written 10 weeks ago by
Ειρήνη
• 0
0
votes
0
replies
211
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
5 months ago
Virangika
• 0
0
votes
2
replies
2.0k
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How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2
SpikeIn
Normalization
updated 4 months ago by
maria.soler
• 0 • written 20 months ago by
kalavattam
▴ 10
6
votes
12
replies
4.4k
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Using edgeR and a spike-in to calculate absolute abundance
edgeR
SpikeIn
RNASeq
updated 11 months ago by
Miguel
• 0 • written 3.6 years ago by
robert.chen
• 0
5 results • Page
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Comment: Question on performing ANOVA-like analysis using limma
by
Gordon Smyth
51k
What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, it isn't clear from your que…
Answer: Question on performing ANOVA-like analysis using limma
by
Gordon Smyth
51k
In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…
Comment: AffylmGUI does not start wit R 4.4.1
by
Gordon Smyth
51k
Glad to hear that you have figured it out. Your experience might help other people with limmaGUI or affylmGUI on MacOS as well.
Answer: rtracklayer accessing UCSC data table not working
by
James W. MacDonald
67k
The track argument is deprecated now, so you can omit it. ``` > tbl.rmsk <- getTable(ucscTableQuery(mySession, table = "rmsk", range = …
Answer: For feline genome
by
James W. MacDonald
67k
This support site is meant to help people with specific questions about using Bioconductor software. There is a [vignette for `ROntoTools`]…
Votes
Comment: AffylmGUI does not start wit R 4.4.1
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used
Answer: unable to access Annotationhub latest record
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