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3 months ago
Virangika
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Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
updated 17 months ago by
ATpoint
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written 17 months ago by
kalavattam
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updated 11 weeks ago by
maria.soler
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written 18 months ago by
kalavattam
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2.9 years ago
mb1996
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updated 10 months ago by
Miguel
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written 3.4 years ago by
robert.chen
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
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0
I ran the debugger and this is the line that causes the error:
```
if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
•
0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
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4.0k
FYI (since I just finalized a run with `salmon`).
For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
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