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About CIRI's output
ciri splicing splicesites
updated 3.2 years ago by • 0 • written 4.9 years ago by • 0
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phastCon-scores
rtracklayer spliceSites rtracklayer spliceSites
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 50
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Comment: deseq2 normalization and statistical method by ATpoint ★ 2.4k
Either the company provides you full code and software versions or (imo) their anslysis is basically useless as not reproducible.
Answer: HISAT2 mapping by ATpoint ★ 2.4k
hisat2 is not a Bioconductor package. Please ask at biostars.org or elsewhere.
Comment: deseq2 normalization and statistical method by SH • 0
Thank you for answering my repeated question. Although the documentation states that normalization is not necessary, I was confused because…
Answer: Reducing dataset size to improve run time for fitGAM in tradeSeq by Koen Van den Berge ▴ 180
Hi, We recommend keeping the entire count matrix and using the genes argument. This way, you still use the data from all genes to do th…
Comment: Multiple issues reading in peak sets with Diffbind by LV • 0
I have also had this problem today with a sample sheet that appears to be just like another sheet I previously used. I also had narrow as t…
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Answer: deseq2 normalization and statistical method
Answer: Question about filter by expression (filterByExpr) in edgeR
Answer: Question about filter by expression (filterByExpr) in edgeR
Answer: Help with error install csaw
Comment: Help with error install csaw
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