Bioconductor Splicewiz

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Bioconductor SpliceWiz

6 weeks ago • updated 5 weeks ago jalte.jelsing • 0

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243

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alternativeSplicingEvents.hg38 AlternativeSplicing SpliceWiz

8 months ago rachel.a.shoemaker • 0

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729

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SpliceWiz

21 months ago • updated 20 months ago yyu109 • 0

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1.5k

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SpliceWiz

updated 2.8 years ago by a.wong ▴ 10 • written 2.8 years ago by reza.rahman • 0

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1.7k

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SpliceWiz

updated 17 months ago by giulia.nicoletto.1 • 0 • written 2.8 years ago by chiara.caprioli • 0

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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