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biomaRt connection sql

updated 4.6 years ago by Joan Miró ▴ 80 • written 4.6 years ago by Anand ▴ 10

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 5.7 years ago by James W. MacDonald 68k • written 5.7 years ago by chefer • 0

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R shell Python SQL Job

8.0 years ago ematsen ▴ 20

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biomedical informatics data science python SQL Job

10.0 years ago Doe, Aimee ▴ 40

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Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

Comment: Combining two proteomics datasets with limpa by Andrew Pattison • 0

Thanks heaps Gordon. I went with option 1 and no normalisation and all seems to have worked well. Cheers, Andrew

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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